Literature DB >> 25287913

Thermal green protein, an extremely stable, nonaggregating fluorescent protein created by structure-guided surface engineering.

Devin W Close1,2, Craig Don Paul3, Patricia S Langan1, Matthew C J Wilce3, Daouda A K Traore3, Randal Halfmann4, Reginaldo C Rocha2, Geoffery S Waldo1, Riley J Payne5, Joseph B Rucker5, Mark Prescott3, Andrew R M Bradbury1.   

Abstract

In this article, we describe the engineering and X-ray crystal structure of Thermal Green Protein (TGP), an extremely stable, highly soluble, non-aggregating green fluorescent protein. TGP is a soluble variant of the fluorescent protein eCGP123, which despite being highly stable, has proven to be aggregation-prone. The X-ray crystal structure of eCGP123, also determined within the context of this paper, was used to carry out rational surface engineering to improve its solubility, leading to TGP. The approach involved simultaneously eliminating crystal lattice contacts while increasing the overall negative charge of the protein. Despite intentional disruption of lattice contacts and introduction of high entropy glutamate side chains, TGP crystallized readily in a number of different conditions and the X-ray crystal structure of TGP was determined to 1.9 Å resolution. The structural reasons for the enhanced stability of TGP and eCGP123 are discussed. We demonstrate the utility of using TGP as a fusion partner in various assays and significantly, in amyloid assays in which the standard fluorescent protein, EGFP, is undesirable because of aberrant oligomerization.
© 2014 Wiley Periodicals, Inc.

Entities:  

Keywords:  GFP structure; X-ray crystallography; eCGP123; protein engineering; structure-guided mutagenesis; thermal green protein; thermal stability

Mesh:

Substances:

Year:  2015        PMID: 25287913      PMCID: PMC4592778          DOI: 10.1002/prot.24699

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  68 in total

1.  1.8 A bright-state structure of the reversibly switchable fluorescent protein Dronpa guides the generation of fast switching variants.

Authors:  Andre C Stiel; Simon Trowitzsch; Gert Weber; Martin Andresen; Christian Eggeling; Stefan W Hell; Stefan Jakobs; Markus C Wahl
Journal:  Biochem J       Date:  2007-02-15       Impact factor: 3.857

2.  HKL-3000: the integration of data reduction and structure solution--from diffraction images to an initial model in minutes.

Authors:  Wladek Minor; Marcin Cymborowski; Zbyszek Otwinowski; Maksymilian Chruszcz
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2006-07-18

3.  In vivo and in vitro protein solubility assays using split GFP.

Authors:  Stéphanie Cabantous; Geoffrey S Waldo
Journal:  Nat Methods       Date:  2006-10       Impact factor: 28.547

4.  Supercharging proteins can impart unusual resilience.

Authors:  Michael S Lawrence; Kevin J Phillips; David R Liu
Journal:  J Am Chem Soc       Date:  2007-08-01       Impact factor: 15.419

5.  Inference of macromolecular assemblies from crystalline state.

Authors:  Evgeny Krissinel; Kim Henrick
Journal:  J Mol Biol       Date:  2007-05-13       Impact factor: 5.469

6.  The creation of a novel fluorescent protein by guided consensus engineering.

Authors:  Mingha Dai; Hugh E Fisher; Jamshid Temirov; Csaba Kiss; Mary E Phipps; Peter Pavlik; James H Werner; Andrew R M Bradbury
Journal:  Protein Eng Des Sel       Date:  2007-02-02       Impact factor: 1.650

7.  The 1.7 A crystal structure of Dronpa: a photoswitchable green fluorescent protein.

Authors:  Pascal G Wilmann; Kristina Turcic; Jion M Battad; Matthew C J Wilce; Rodney J Devenish; Mark Prescott; Jamie Rossjohn
Journal:  J Mol Biol       Date:  2006-09-03       Impact factor: 5.469

8.  Protein crystallization by surface entropy reduction: optimization of the SER strategy.

Authors:  David R Cooper; Tomasz Boczek; Katarzyna Grelewska; Malgorzata Pinkowska; Malgorzata Sikorska; Michal Zawadzki; Zygmunt Derewenda
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-04-21

9.  Expression and use of superfolder green fluorescent protein at high temperatures in vivo: a tool to study extreme thermophile biology.

Authors:  Felipe Cava; Miguel Angel de Pedro; Emilio Blas-Galindo; Geoffrey S Waldo; Lars F Westblade; José Berenguer
Journal:  Environ Microbiol       Date:  2008-01-07       Impact factor: 5.491

10.  A suite of Gateway cloning vectors for high-throughput genetic analysis in Saccharomyces cerevisiae.

Authors:  Simon Alberti; Aaron D Gitler; Susan Lindquist
Journal:  Yeast       Date:  2007-10       Impact factor: 3.239

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  7 in total

1.  Mispacking and the Fitness Landscape of the Green Fluorescent Protein Chromophore Milieu.

Authors:  Shounak Banerjee; Christian D Schenkelberg; Thomas B Jordan; Julia M Reimertz; Emily E Crone; Donna E Crone; Christopher Bystroff
Journal:  Biochemistry       Date:  2017-01-24       Impact factor: 3.162

2.  Construction, characterization and crystal structure of a fluorescent single-chain Fv chimera.

Authors:  Nileena Velappan; Devin Close; Li-Wei Hung; Leslie Naranjo; Colin Hemez; Natasha DeVore; Donna K McCullough; Antonietta M Lillo; Geoffrey S Waldo; Andrew R M Bradbury
Journal:  Protein Eng Des Sel       Date:  2021-02-15       Impact factor: 1.650

3.  Fluorescence-Detection Size-Exclusion Chromatography-Based Thermostability Assay for Membrane Proteins.

Authors:  Hebang Yao; Hongmin Cai; Dianfan Li
Journal:  Methods Mol Biol       Date:  2023

4.  Engineering an efficient and bright split Corynactis californica green fluorescent protein.

Authors:  Hau B Nguyen; Thomas C Terwilliger; Geoffrey S Waldo
Journal:  Sci Rep       Date:  2021-09-16       Impact factor: 4.996

5.  X-Ray Crystal Structure and Properties of Phanta, a Weakly Fluorescent Photochromic GFP-Like Protein.

Authors:  Craig Don Paul; Daouda A K Traore; Seth Olsen; Rodney J Devenish; Devin W Close; Toby D M Bell; Andrew Bradbury; Matthew C J Wilce; Mark Prescott
Journal:  PLoS One       Date:  2015-04-29       Impact factor: 3.240

6.  An improved fluorescent tag and its nanobodies for membrane protein expression, stability assay, and purification.

Authors:  Hongmin Cai; Hebang Yao; Tingting Li; Cedric A J Hutter; Yanfang Li; Yannan Tang; Markus A Seeger; Dianfan Li
Journal:  Commun Biol       Date:  2020-12-10

Review 7.  β-Barrels and Amyloids: Structural Transitions, Biological Functions, and Pathogenesis.

Authors:  Anna I Sulatskaya; Anastasiia O Kosolapova; Alexander G Bobylev; Mikhail V Belousov; Kirill S Antonets; Maksim I Sulatsky; Irina M Kuznetsova; Konstantin K Turoverov; Olesya V Stepanenko; Anton A Nizhnikov
Journal:  Int J Mol Sci       Date:  2021-10-20       Impact factor: 5.923

  7 in total

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