Literature DB >> 17117927

1.8 A bright-state structure of the reversibly switchable fluorescent protein Dronpa guides the generation of fast switching variants.

Andre C Stiel1, Simon Trowitzsch, Gert Weber, Martin Andresen, Christian Eggeling, Stefan W Hell, Stefan Jakobs, Markus C Wahl.   

Abstract

RSFPs (reversibly switchable fluorescent proteins) may be repeatedly converted between a fluorescent and a non-fluorescent state by irradiation and have attracted widespread interest for many new applications. The RSFP Dronpa may be switched with blue light from a fluorescent state into a non-fluorescent state, and back again with UV light. To obtain insight into the underlying molecular mechanism of this switching, we have determined the crystal structure of the fluorescent equilibrium state of Dronpa. Its bicyclic chromophore is formed spontaneously from the Cys62-Tyr63-Gly64 tripeptide. In the fluorescent state, it adopts a slightly non-coplanar cis conformation within the interior of a typical GFP (green fluorescent protein) b-can fold. Dronpa shares some structural features with asFP595, another RSFP whose chromophore has previously been demonstrated to undergo a cis-trans isomerization upon photoswitching. Based on the structural comparison with asFP595, we have generated new Dronpa variants with an up to more than 1000-fold accelerated switching behaviour. The mutations which were introduced at position Val157 or Met159 apparently reduce the steric hindrance for a cis-trans isomerization of the chromophore, thus lowering the energy barrier for the blue light-driven on-to-off transition. The findings reported in the present study support the view that a cis-trans isomerization is one of the key events common to the switching mechanism in RSFPs.

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Year:  2007        PMID: 17117927      PMCID: PMC1783997          DOI: 10.1042/BJ20061401

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  29 in total

1.  ARP/wARP and automatic interpretation of protein electron density maps.

Authors:  Richard J Morris; Anastassis Perrakis; Victor S Lamzin
Journal:  Methods Enzymol       Date:  2003       Impact factor: 1.600

2.  Assessment of phase accuracy by cross validation: the free R value. Methods and applications.

Authors:  A T Brünger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1993-01-01

Review 3.  Concepts for nanoscale resolution in fluorescence microscopy.

Authors:  Stefan W Hell; Marcus Dyba; Stefan Jakobs
Journal:  Curr Opin Neurobiol       Date:  2004-10       Impact factor: 6.627

Review 4.  Fluorescent proteins as a toolkit for in vivo imaging.

Authors:  Dmitriy M Chudakov; Sergey Lukyanov; Konstantin A Lukyanov
Journal:  Trends Biotechnol       Date:  2005-11-02       Impact factor: 19.536

5.  Visualizing neurons one-by-one in vivo: optical dissection and reconstruction of neural networks with reversible fluorescent proteins.

Authors:  Shinsuke Aramaki; Kohei Hatta
Journal:  Dev Dyn       Date:  2006-08       Impact factor: 3.780

6.  Structural basis for the fast maturation of Arthropoda green fluorescent protein.

Authors:  Artem G Evdokimov; Matthew E Pokross; Nikolay S Egorov; Andrey G Zaraisky; Ilya V Yampolsky; Ekaterina M Merzlyak; Andrey N Shkoporov; Ian Sander; Konstantin A Lukyanov; Dmitriy M Chudakov
Journal:  EMBO Rep       Date:  2006-08-25       Impact factor: 8.807

Review 7.  The green fluorescent protein.

Authors:  R Y Tsien
Journal:  Annu Rev Biochem       Date:  1998       Impact factor: 23.643

8.  The 1.7 A crystal structure of Dronpa: a photoswitchable green fluorescent protein.

Authors:  Pascal G Wilmann; Kristina Turcic; Jion M Battad; Matthew C J Wilce; Rodney J Devenish; Mark Prescott; Jamie Rossjohn
Journal:  J Mol Biol       Date:  2006-09-03       Impact factor: 5.469

9.  Kindling fluorescent protein from Anemonia sulcata: dark-state structure at 1.38 A resolution.

Authors:  Michael L Quillin; David M Anstrom; Xiaokun Shu; Shannon O'Leary; Karen Kallio; Dmitry M Chudakov; S James Remington
Journal:  Biochemistry       Date:  2005-04-19       Impact factor: 3.162

10.  Reversible single-molecule photoswitching in the GFP-like fluorescent protein Dronpa.

Authors:  Satoshi Habuchi; Ryoko Ando; Peter Dedecker; Wendy Verheijen; Hideaki Mizuno; Atsushi Miyawaki; Johan Hofkens
Journal:  Proc Natl Acad Sci U S A       Date:  2005-06-22       Impact factor: 11.205

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  72 in total

1.  Protein-flexibility mediated coupling between photoswitching kinetics and surrounding viscosity of a photochromic fluorescent protein.

Authors:  Ya-Ting Kao; Xinxin Zhu; Wei Min
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-10       Impact factor: 11.205

Review 2.  Diversity in genetic in vivo methods for protein-protein interaction studies: from the yeast two-hybrid system to the mammalian split-luciferase system.

Authors:  Bram Stynen; Hélène Tournu; Jan Tavernier; Patrick Van Dijck
Journal:  Microbiol Mol Biol Rev       Date:  2012-06       Impact factor: 11.056

3.  The structure of mAG, a monomeric mutant of the green fluorescent protein Azami-Green, reveals the structural basis of its stable green emission.

Authors:  Tatsuki Ebisawa; Akihiro Yamamura; Yasuhiro Kameda; Kou Hayakawa; Koji Nagata; Masaru Tanokura
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-04-29

4.  Molecular basis of the light-driven switching of the photochromic fluorescent protein Padron.

Authors:  Tanja Brakemann; Gert Weber; Martin Andresen; Gerrit Groenhof; Andre C Stiel; Simon Trowitzsch; Christian Eggeling; Helmut Grubmüller; Stefan W Hell; Markus C Wahl; Stefan Jakobs
Journal:  J Biol Chem       Date:  2010-03-16       Impact factor: 5.157

5.  Optically Modulated Photoswitchable Fluorescent Proteins Yield Improved Biological Imaging Sensitivity.

Authors:  Yen-Cheng Chen; Amy E Jablonski; Irina Issaeva; Daisy Bourassa; Jung-Cheng Hsiang; Christoph J Fahrni; Robert M Dickson
Journal:  J Am Chem Soc       Date:  2015-10-01       Impact factor: 15.419

6.  Highlighted generation of fluorescence signals using simultaneous two-color irradiation on Dronpa mutants.

Authors:  Ryoko Ando; Cristina Flors; Hideaki Mizuno; Johan Hofkens; Atsushi Miyawaki
Journal:  Biophys J       Date:  2007-03-23       Impact factor: 4.033

7.  A structural basis for reversible photoswitching of absorbance spectra in red fluorescent protein rsTagRFP.

Authors:  Sergei Pletnev; Fedor V Subach; Zbigniew Dauter; Alexander Wlodawer; Vladislav V Verkhusha
Journal:  J Mol Biol       Date:  2012-01-30       Impact factor: 5.469

Review 8.  Chromophore chemistry of fluorescent proteins controlled by light.

Authors:  Daria M Shcherbakova; Vladislav V Verkhusha
Journal:  Curr Opin Chem Biol       Date:  2014-05-13       Impact factor: 8.822

Review 9.  The fluorescent protein palette: tools for cellular imaging.

Authors:  Richard N Day; Michael W Davidson
Journal:  Chem Soc Rev       Date:  2009-08-04       Impact factor: 54.564

10.  Crystallization and preliminary X-ray analysis of a monomeric mutant of Azami-Green (mAG), an Aequorea victoria green fluorescent protein-like green-emitting fluorescent protein from the stony coral Galaxea fascicularis.

Authors:  Tatsuki Ebisawa; Akihiro Yamamura; Yasuhiro Kameda; Kou Hayakawa; Koji Nagata; Masaru Tanokura
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-11-27
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