Literature DB >> 28582599

Mechanisms of suppression: The wiring of genetic resilience.

Jolanda van Leeuwen1, Carles Pons2, Charles Boone1,3, Brenda J Andrews1,3.   

Abstract

Recent analysis of genome sequences has identified individuals that are healthy despite carrying severe disease-associated mutations. A possible explanation is that these individuals carry a second genomic perturbation that can compensate for the detrimental effects of the disease allele, a phenomenon referred to as suppression. In model organisms, suppression interactions are generally divided into two classes: genomic suppressors which are secondary mutations in the genome that bypass a mutant phenotype, and dosage suppression interactions in which overexpression of a suppressor gene rescues a mutant phenotype. Here, we describe the general properties of genomic and dosage suppression, with an emphasis on the budding yeast. We propose that suppression interactions between genetic variants are likely relevant for determining the penetrance of human traits. Consequently, an understanding of suppression mechanisms may guide the discovery of protective variants in healthy individuals that carry disease alleles, which could direct the rational design of new therapeutics.
© 2017 WILEY Periodicals, Inc.

Entities:  

Keywords:  compensatory evolution; dosage suppression; epistasis; genetic interactions; protective alleles; suppression interactions; synthetic viability

Mesh:

Year:  2017        PMID: 28582599      PMCID: PMC5681848          DOI: 10.1002/bies.201700042

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  71 in total

Review 1.  Ordering gene function: the interpretation of epistasis in regulatory hierarchies.

Authors:  L Avery; S Wasserman
Journal:  Trends Genet       Date:  1992-09       Impact factor: 11.639

2.  The mystery of missing heritability: Genetic interactions create phantom heritability.

Authors:  Or Zuk; Eliana Hechter; Shamil R Sunyaev; Eric S Lander
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-05       Impact factor: 11.205

3.  Nonsense suppression in yeast cells overproducing Sup35 (eRF3) is caused by its non-heritable amyloids.

Authors:  Aleksandra B Salnikova; Dmitry S Kryndushkin; Vladimir N Smirnov; Vitaly V Kushnirov; Michael D Ter-Avanesyan
Journal:  J Biol Chem       Date:  2004-12-23       Impact factor: 5.157

Review 4.  BRCA1, PARP, and 53BP1: conditional synthetic lethality and synthetic viability.

Authors:  Amal Aly; Shridar Ganesan
Journal:  J Mol Cell Biol       Date:  2011-02       Impact factor: 6.216

5.  Identification of a dominant-negative mutation in the yeast CDC25 guanine nucleotide exchange factor for Ras.

Authors:  W Park; R D Mosteller; D Broek
Journal:  Oncogene       Date:  1997-02-20       Impact factor: 9.867

Review 6.  Mechanisms of suppression.

Authors:  P E Hartman; J R Roth
Journal:  Adv Genet       Date:  1973       Impact factor: 1.944

7.  Rescue of embryonic lethality in Mdm2-deficient mice by absence of p53.

Authors:  S N Jones; A E Roe; L A Donehower; A Bradley
Journal:  Nature       Date:  1995-11-09       Impact factor: 49.962

Review 8.  Nonsense-mediated decay in genetic disease: friend or foe?

Authors:  Jake N Miller; David A Pearce
Journal:  Mutat Res Rev Mutat Res       Date:  2014-05-28       Impact factor: 5.657

9.  REV7 counteracts DNA double-strand break resection and affects PARP inhibition.

Authors:  J Ross Chapman; Inger Brandsma; Guotai Xu; Jingsong Yuan; Martin Mistrik; Peter Bouwman; Jirina Bartkova; Ewa Gogola; Daniël Warmerdam; Marco Barazas; Janneke E Jaspers; Kenji Watanabe; Mark Pieterse; Ariena Kersbergen; Wendy Sol; Patrick H N Celie; Philip C Schouten; Bram van den Broek; Ahmed Salman; Marja Nieuwland; Iris de Rink; Jorma de Ronde; Kees Jalink; Simon J Boulton; Junjie Chen; Dik C van Gent; Jiri Bartek; Jos Jonkers; Piet Borst; Sven Rottenberg
Journal:  Nature       Date:  2015-03-23       Impact factor: 49.962

10.  Differential Stoichiometry among Core Ribosomal Proteins.

Authors:  Nikolai Slavov; Stefan Semrau; Edoardo Airoldi; Bogdan Budnik; Alexander van Oudenaarden
Journal:  Cell Rep       Date:  2015-10-22       Impact factor: 9.423

View more
  15 in total

1.  Mapping a diversity of genetic interactions in yeast.

Authors:  Jolanda van Leeuwen; Charles Boone; Brenda J Andrews
Journal:  Curr Opin Syst Biol       Date:  2017-08-12

Review 2.  Suppressor Mutants: History and Today's Applications.

Authors:  David E Bautista; Joseph F Carr; Angela M Mitchell
Journal:  EcoSal Plus       Date:  2021-12-15

3.  High-throughput mapping of the phage resistance landscape in E. coli.

Authors:  Vivek K Mutalik; Benjamin A Adler; Harneet S Rishi; Denish Piya; Crystal Zhong; Britt Koskella; Elizabeth M Kutter; Richard Calendar; Pavel S Novichkov; Morgan N Price; Adam M Deutschbauer; Adam P Arkin
Journal:  PLoS Biol       Date:  2020-10-13       Impact factor: 8.029

Review 4.  Critical genomic regulation mediated by Enhancer of Polycomb.

Authors:  Naomi E Searle; Lorraine Pillus
Journal:  Curr Genet       Date:  2017-09-07       Impact factor: 3.886

5.  New approaches to predict the effect of co-occurring variants on protein characteristics.

Authors:  David Holcomb; Nobuko Hamasaki-Katagiri; Kyle Laurie; Upendra Katneni; Jacob Kames; Aikaterini Alexaki; Haim Bar; Chava Kimchi-Sarfaty
Journal:  Am J Hum Genet       Date:  2021-07-12       Impact factor: 11.025

6.  Whole-Genome Sequencing of Suppressor DNA Mixtures Identifies Pathways That Compensate for Chromosome Segregation Defects in Schizosaccharomyces pombe.

Authors:  Xingya Xu; Li Wang; Mitsuhiro Yanagida
Journal:  G3 (Bethesda)       Date:  2018-03-02       Impact factor: 3.154

7.  Suppressor screening reveals common kleisin-hinge interaction in condensin and cohesin, but different modes of regulation.

Authors:  Xingya Xu; Mitsuhiro Yanagida
Journal:  Proc Natl Acad Sci U S A       Date:  2019-05-09       Impact factor: 11.205

Review 8.  Genetic Modifiers and Rare Mendelian Disease.

Authors:  K M Tahsin Hassan Rahit; Maja Tarailo-Graovac
Journal:  Genes (Basel)       Date:  2020-02-25       Impact factor: 4.096

9.  Rapid adaptation of signaling networks in the fungal pathogen Magnaporthe oryzae.

Authors:  Stefan Bohnert; Luis Antelo; Christiane Grünewald; Alexander Yemelin; Karsten Andresen; Stefan Jacob
Journal:  BMC Genomics       Date:  2019-10-22       Impact factor: 3.969

10.  Natural variants suppress mutations in hundreds of essential genes.

Authors:  Leopold Parts; Amandine Batté; Maykel Lopes; Michael W Yuen; Meredith Laver; Bryan-Joseph San Luis; Jia-Xing Yue; Carles Pons; Elise Eray; Patrick Aloy; Gianni Liti; Jolanda van Leeuwen
Journal:  Mol Syst Biol       Date:  2021-05       Impact factor: 13.068

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.