Literature DB >> 30505984

Mapping a diversity of genetic interactions in yeast.

Jolanda van Leeuwen1, Charles Boone1,2, Brenda J Andrews1,2.   

Abstract

Genetic interactions occur when the combination of multiple mutations yields an unexpected phenotype, and they may confound our ability to fully understand the genetic mechanisms underlying complex diseases. Genetic interactions are challenging to study because there are millions of possible different variant combinations within a given genome. Consequently, they have primarily been systematically explored in unicellular model organisms, such as yeast, with a focus on pairwise genetic interactions between loss-of-function alleles. However, there are many different types of genetic interactions, such as those occurring between gain-of-function or heterozygous mutations. Here, we review recent advances made in the systematic analysis of such diverse genetic interactions in yeast, and briefly discuss how similar studies could be undertaken in human cells.

Entities:  

Keywords:  complex haploinsufficiency; dosage interactions; epistasis; genetic interactions; higher-order interactions

Year:  2017        PMID: 30505984      PMCID: PMC6269142          DOI: 10.1016/j.coisb.2017.08.002

Source DB:  PubMed          Journal:  Curr Opin Syst Biol        ISSN: 2452-3100


  63 in total

1.  Mechanisms of haploinsufficiency revealed by genome-wide profiling in yeast.

Authors:  Adam M Deutschbauer; Daniel F Jaramillo; Michael Proctor; Jochen Kumm; Maureen E Hillenmeyer; Ronald W Davis; Corey Nislow; Guri Giaever
Journal:  Genetics       Date:  2005-02-16       Impact factor: 4.562

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3.  Genome-scale CRISPR-Cas9 knockout screening in human cells.

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Journal:  Science       Date:  2013-12-12       Impact factor: 47.728

Review 4.  Mechanisms of suppression: The wiring of genetic resilience.

Authors:  Jolanda van Leeuwen; Carles Pons; Charles Boone; Brenda J Andrews
Journal:  Bioessays       Date:  2017-06-05       Impact factor: 4.345

5.  Targeted nucleotide editing using hybrid prokaryotic and vertebrate adaptive immune systems.

Authors:  Keiji Nishida; Takayuki Arazoe; Nozomu Yachie; Satomi Banno; Mika Kakimoto; Mayura Tabata; Masao Mochizuki; Aya Miyabe; Michihiro Araki; Kiyotaka Y Hara; Zenpei Shimatani; Akihiko Kondo
Journal:  Science       Date:  2016-08-04       Impact factor: 47.728

6.  The ctf13-30/CTF13 genomic haploinsufficiency modifier screen identifies the yeast chromatin remodeling complex RSC, which is required for the establishment of sister chromatid cohesion.

Authors:  Kristin K Baetz; Nevan J Krogan; Andrew Emili; Jack Greenblatt; Philip Hieter
Journal:  Mol Cell Biol       Date:  2004-02       Impact factor: 4.272

7.  Efficient introduction of specific homozygous and heterozygous mutations using CRISPR/Cas9.

Authors:  Dominik Paquet; Dylan Kwart; Antonia Chen; Andrew Sproul; Samson Jacob; Shaun Teo; Kimberly Moore Olsen; Andrew Gregg; Scott Noggle; Marc Tessier-Lavigne
Journal:  Nature       Date:  2016-04-27       Impact factor: 49.962

8.  A global reference for human genetic variation.

Authors:  Adam Auton; Lisa D Brooks; Richard M Durbin; Erik P Garrison; Hyun Min Kang; Jan O Korbel; Jonathan L Marchini; Shane McCarthy; Gil A McVean; Gonçalo R Abecasis
Journal:  Nature       Date:  2015-10-01       Impact factor: 49.962

9.  Transcriptional Derepression Uncovers Cryptic Higher-Order Genetic Interactions.

Authors:  Matthew B Taylor; Ian M Ehrenreich
Journal:  PLoS Genet       Date:  2015-10-20       Impact factor: 5.917

10.  Mapping the Synthetic Dosage Lethality Network of CDK1/CDC28.

Authors:  Christine Zimmermann; Ignacio Garcia; Manja Omerzu; Pierre Chymkowitch; Beibei Zhang; Jorrit M Enserink
Journal:  G3 (Bethesda)       Date:  2017-06-07       Impact factor: 3.154

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  6 in total

Review 1.  Not quite the SSAme: unique roles for the yeast cytosolic Hsp70s.

Authors:  Sarah K Lotz; Laura E Knighton; Gary W Jones; Andrew W Truman
Journal:  Curr Genet       Date:  2019-04-24       Impact factor: 3.886

2.  Mapping Synthetic Dosage Lethal Genetic Interactions in Saccharomyces cerevisiae.

Authors:  Akil Hamza; Leanne Amitzi; Supipi Duffy; Philip Hieter
Journal:  Methods Mol Biol       Date:  2021

3.  Enhancement and mapping of tolerance to salt stress and 5-fluorocytosine in synthetic yeast strains via SCRaMbLE.

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Journal:  Synth Syst Biotechnol       Date:  2022-04-16

Review 4.  Humanized yeast to model human biology, disease and evolution.

Authors:  Aashiq H Kachroo; Michelle Vandeloo; Brittany M Greco; Mudabir Abdullah
Journal:  Dis Model Mech       Date:  2022-06-06       Impact factor: 5.732

5.  Chromatin regulatory genes differentially interact in networks to facilitate distinct GAL1 activity and noise profiles.

Authors:  David F Moreno; Murat Acar
Journal:  Curr Genet       Date:  2020-11-07       Impact factor: 3.886

6.  Genetic interaction profiles of regulatory kinases differ between environmental conditions and cellular states.

Authors:  Siyu Sun; Anastasia Baryshnikova; Nathan Brandt; David Gresham
Journal:  Mol Syst Biol       Date:  2020-05       Impact factor: 11.429

  6 in total

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