Literature DB >> 25261766

Recent advances in the evolutionary engineering of industrial biocatalysts.

James D Winkler1, Katy C Kao2.   

Abstract

Evolutionary engineering has been used to improve key industrial strain traits, such as carbon source utilization, tolerance to adverse environmental conditions, and resistance to chemical inhibitors, for many decades due to its technical simplicity and effectiveness. The lack of need for prior genetic knowledge underlying the phenotypes of interest makes this a powerful approach for strain development for even species with minimal genotypic information. While the basic experimental procedure for laboratory adaptive evolution has remained broadly similar for many years, a range of recent advances show promise for improving the experimental workflows for evolutionary engineering by accelerating the pace of evolution, simplifying the analysis of evolved mutants, and providing new ways of linking desirable phenotypes to selectable characteristics. This review aims to highlight some of these recent advances and discuss how they may be used to improve industrially relevant microbial phenotypes.
Copyright © 2014 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Adaptation; Automation; Complex phenotypes; Evolutionary engineering; Mutagenesis; Selection

Mesh:

Year:  2014        PMID: 25261766     DOI: 10.1016/j.ygeno.2014.09.006

Source DB:  PubMed          Journal:  Genomics        ISSN: 0888-7543            Impact factor:   5.736


  14 in total

Review 1.  Experimental Evolution of Innovation and Novelty.

Authors:  Rees Kassen
Journal:  Trends Ecol Evol       Date:  2019-04-23       Impact factor: 17.712

Review 2.  Understanding metabolic adaptation by using bacterial laboratory evolution and trans-omics analysis.

Authors:  Takaaki Horinouchi; Chikara Furusawa
Journal:  Biophys Rev       Date:  2020-05-11

Review 3.  The emergence of adaptive laboratory evolution as an efficient tool for biological discovery and industrial biotechnology.

Authors:  Troy E Sandberg; Michael J Salazar; Liam L Weng; Bernhard O Palsson; Adam M Feist
Journal:  Metab Eng       Date:  2019-08-08       Impact factor: 9.783

4.  Experimental evolution: prospects and challenges.

Authors:  Frank Rosenzweig; Gavin Sherlock
Journal:  Genomics       Date:  2014-12       Impact factor: 5.736

5.  Benefits of a Recombination-Proficient Escherichia coli System for Adaptive Laboratory Evolution.

Authors:  George Peabody; James Winkler; Weston Fountain; David A Castro; Enzo Leiva-Aravena; Katy C Kao
Journal:  Appl Environ Microbiol       Date:  2016-10-27       Impact factor: 4.792

Review 6.  Strategies to Improve Saccharomyces cerevisiae: Technological Advancements and Evolutionary Engineering.

Authors:  Arun Kumar Dangi; Kashyap Kumar Dubey; Pratyoosh Shukla
Journal:  Indian J Microbiol       Date:  2017-10-06       Impact factor: 2.461

7.  Adaptation of Saccharomyces cerevisiae in a concentrated spent sulphite liquor waste stream for increased inhibitor resistance.

Authors:  Bianca A Brandt; María P García-Aparicio; Johann F Görgens; Willem H van Zyl
Journal:  Appl Microbiol Biotechnol       Date:  2021-12-06       Impact factor: 4.813

8.  Unraveling the genetic basis of xylose consumption in engineered Saccharomyces cerevisiae strains.

Authors:  Leandro Vieira Dos Santos; Marcelo Falsarella Carazzolle; Sheila Tiemi Nagamatsu; Nádia Maria Vieira Sampaio; Ludimila Dias Almeida; Renan Augusto Siqueira Pirolla; Guilherme Borelli; Thamy Lívia Ribeiro Corrêa; Juan Lucas Argueso; Gonçalo Amarante Guimarães Pereira
Journal:  Sci Rep       Date:  2016-12-21       Impact factor: 4.379

9.  Adaptive engineering of a hyperthermophilic archaeon on CO and discovering the underlying mechanism by multi-omics analysis.

Authors:  Seong Hyuk Lee; Min-Sik Kim; Jae-Hak Lee; Tae Wan Kim; Seung Seob Bae; Sung-Mok Lee; Hae Chang Jung; Tae-Jun Yang; Ae Ran Choi; Yong-Jun Cho; Jung-Hyun Lee; Kae Kyoung Kwon; Hyun Sook Lee; Sung Gyun Kang
Journal:  Sci Rep       Date:  2016-03-15       Impact factor: 4.379

Review 10.  Zymomonas mobilis as a model system for production of biofuels and biochemicals.

Authors:  Shihui Yang; Qiang Fei; Yaoping Zhang; Lydia M Contreras; Sagar M Utturkar; Steven D Brown; Michael E Himmel; Min Zhang
Journal:  Microb Biotechnol       Date:  2016-09-15       Impact factor: 5.813

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