Literature DB >> 24765017

(4bS,8aS)-1-Isopropyl-4b,8,8-trimethyl-4b,5,6,7,8,8a,9,10-octa-hydro-phenan-thren-2-yl acetate.

Radouane Oubabi1, Aziz Auhmani1, My Youssef Ait Itto1, Abdelwahed Auhmani1, Jean-Claude Daran2.   

Abstract

The hemisynthesis of the title compound, C22H32O2, was carried out through direct acetyl-ation reaction of the naturally occurring diterpene totarol [systematic name: (4bS,8aS)-4b,8,8-trimethyl-1-propan-2-yl-5,6,7,8a,9,10-hexa-hydro-phen-an-thren-2-ol]. The mol-ecule is built up from three fused six membered rings, one saturated and two unsaturated. The central unsaturated ring has a half-chair conformation, whereas the other unsaturated ring displays a chair conformation. The absolute configuration is deduced from the chemical pathway. The value of the Hooft parameter [-0.10 (6)] allowed this absolute configuration to be confirmed.

Entities:  

Year:  2014        PMID: 24765017      PMCID: PMC3998421          DOI: 10.1107/S1600536814002748

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis, see: Short & Stromberg (1937 ▶). For biological properties of totarol, see: Barrero et al. (2003 ▶); Bernabeu et al. (2002 ▶); Haraguchi et al. (1996 ▶); Marcos et al. (2003 ▶); Tacon et al. (2012 ▶). For related structures, see: Zeroual et al. (2008 ▶); Pettit et al. (2004 ▶). For structural discussion, see: Cremer & Pople (1975 ▶); Flack (1983 ▶); Flack & Bernardinelli (2000 ▶); Spek (2009 ▶).

Experimental

Crystal data

C22H32O2 M = 328.47 Monoclinic, a = 7.4250 (2) Å b = 10.5716 (3) Å c = 12.0747 (3) Å β = 90.124 (2)° V = 947.79 (4) Å3 Z = 2 Cu Kα radiation μ = 0.55 mm−1 T = 180 K 0.38 × 0.38 × 0.14 mm

Data collection

Agilent Xcalibur (Eos, Gemini ultra) diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012) ▶ T min = 0.860, T max = 1.000 4370 measured reflections 2511 independent reflections 2490 reflections with I > 2σ(I) R int = 0.012 θmax = 60.7°

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.075 S = 1.04 2511 reflections 225 parameters 1 restraint H-atom parameters constrained Δρmax = 0.13 e Å−3 Δρmin = −0.14 e Å−3 Absolute structure: Refined as an inversion twin. Absolute structure parameter: 0.0 (3) Data collection: CrysAlis PRO (Agilent, 2012 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶) ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL2013. Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536814002748/xu5767sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814002748/xu5767Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814002748/xu5767Isup3.cml CCDC reference: Additional supporting information: crystallographic information; 3D view; checkCIF report
C22H32O2F(000) = 360
Mr = 328.47Dx = 1.151 Mg m3
Monoclinic, P21Cu Kα radiation, λ = 1.54184 Å
a = 7.4250 (2) ÅCell parameters from 3311 reflections
b = 10.5716 (3) Åθ = 3.7–60.6°
c = 12.0747 (3) ŵ = 0.55 mm1
β = 90.124 (2)°T = 180 K
V = 947.79 (4) Å3Box, colourless
Z = 20.38 × 0.38 × 0.14 mm
Agilent Xcalibur (Eos, Gemini ultra) diffractometer2511 independent reflections
Radiation source: Enhance Ultra (Cu) X-ray Source2490 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.012
Detector resolution: 16.1978 pixels mm-1θmax = 60.7°, θmin = 3.7°
ω scansh = −7→8
Absorption correction: multi-scan Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm (CrysAlis PRO, Agilent, 2012)k = −11→11
Tmin = 0.860, Tmax = 1.000l = −13→13
4370 measured reflections
Refinement on F2H-atom parameters constrained
Least-squares matrix: fullw = 1/[σ2(Fo2) + (0.0433P)2 + 0.168P] where P = (Fo2 + 2Fc2)/3
R[F2 > 2σ(F2)] = 0.029(Δ/σ)max < 0.001
wR(F2) = 0.075Δρmax = 0.13 e Å3
S = 1.04Δρmin = −0.14 e Å3
2511 reflectionsExtinction correction: SHELXL2013 (Sheldrick, 2013), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
225 parametersExtinction coefficient: 0.050 (2)
1 restraintAbsolute structure: Refined as an inversion twin.
Hydrogen site location: inferred from neighbouring sitesAbsolute structure parameter: 0.0 (3)
Experimental. Absorption correction: Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm (CrysAlis PRO; Agilent Technologies, 2012)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refined as a 2-component inversion twin.
xyzUiso*/Ueq
C10.6487 (3)0.6992 (2)0.17276 (16)0.0270 (5)
C20.4780 (3)0.7203 (2)0.13012 (17)0.0283 (5)
C30.3461 (3)0.7823 (2)0.18816 (19)0.0334 (5)
H30.23040.79480.15620.040*
C40.3833 (3)0.8262 (2)0.29347 (18)0.0319 (5)
H40.29160.86820.33410.038*
C4A0.5533 (3)0.81000 (19)0.34131 (17)0.0244 (5)
C4B0.5942 (3)0.8675 (2)0.45589 (18)0.0258 (5)
C50.4239 (3)0.8711 (3)0.52884 (19)0.0346 (6)
H5A0.33760.93270.49720.041*
H5B0.36590.78680.52760.041*
C60.4646 (3)0.9074 (3)0.6486 (2)0.0406 (6)
H6A0.51440.99420.65090.049*
H6B0.35150.90670.69190.049*
C70.5980 (3)0.8167 (3)0.70024 (18)0.0371 (6)
H7A0.54270.73150.70330.045*
H7B0.62220.84380.77730.045*
C80.7773 (3)0.8075 (2)0.63830 (18)0.0338 (5)
C8A0.7386 (3)0.7834 (2)0.51303 (17)0.0275 (5)
H8A0.68960.69540.50930.033*
C90.9073 (3)0.7813 (3)0.44192 (19)0.0372 (6)
H9A0.95210.86870.43220.045*
H9B1.00220.73190.48010.045*
C100.8707 (3)0.7233 (3)0.32926 (18)0.0366 (6)
H10A0.96170.75610.27680.044*
H10B0.88900.63070.33510.044*
C10A0.6862 (3)0.74630 (19)0.28005 (17)0.0261 (5)
C110.7945 (3)0.6336 (2)0.10479 (18)0.0343 (6)
H110.89780.61810.15620.041*
C120.7413 (4)0.5048 (3)0.0572 (2)0.0540 (8)
H12A0.85010.45620.04000.081*
H12B0.67040.5170−0.01050.081*
H12C0.66910.45850.11170.081*
C130.8634 (4)0.7225 (3)0.0150 (2)0.0518 (7)
H13A0.91030.79980.04920.078*
H13B0.76440.7440−0.03550.078*
H13C0.95970.6807−0.02660.078*
C140.6541 (4)1.0050 (2)0.4337 (2)0.0433 (6)
H14A0.55901.04970.39330.065*
H14B0.76471.00470.38950.065*
H14C0.67681.04780.50440.065*
C150.8902 (4)0.9257 (3)0.6616 (2)0.0489 (7)
H15A0.92510.92700.73990.073*
H15B0.81931.00130.64440.073*
H15C0.99860.92430.61540.073*
C160.8803 (4)0.6933 (3)0.6843 (2)0.0561 (8)
H16A0.81520.61540.66570.084*
H16B0.89050.70080.76490.084*
H16C1.00090.69050.65160.084*
C170.3222 (3)0.5899 (2)0.00169 (19)0.0345 (6)
C180.3010 (4)0.5659 (3)−0.1197 (2)0.0460 (7)
H18A0.18780.5206−0.13310.069*
H18B0.40210.5146−0.14610.069*
H18C0.29910.6467−0.15940.069*
O10.4419 (2)0.68523 (16)0.01943 (11)0.0338 (4)
O20.2470 (2)0.53449 (19)0.07423 (14)0.0491 (5)
U11U22U33U12U13U23
C10.0302 (12)0.0261 (11)0.0248 (11)0.0012 (10)0.0028 (9)0.0023 (9)
C20.0305 (12)0.0316 (12)0.0230 (10)−0.0026 (10)0.0004 (9)0.0014 (9)
C30.0244 (12)0.0444 (13)0.0315 (12)0.0021 (11)−0.0022 (9)0.0002 (10)
C40.0269 (12)0.0355 (12)0.0333 (12)0.0060 (10)0.0031 (9)−0.0010 (10)
C4A0.0256 (11)0.0205 (10)0.0271 (11)0.0010 (9)0.0026 (8)0.0024 (9)
C4B0.0262 (11)0.0221 (10)0.0290 (11)0.0006 (9)0.0022 (9)−0.0022 (9)
C50.0302 (12)0.0422 (13)0.0314 (12)0.0063 (11)0.0022 (10)−0.0072 (10)
C60.0327 (13)0.0533 (17)0.0357 (13)0.0027 (12)0.0065 (10)−0.0129 (12)
C70.0413 (14)0.0448 (14)0.0253 (11)−0.0082 (12)0.0023 (10)−0.0068 (11)
C80.0342 (12)0.0386 (13)0.0286 (11)0.0002 (11)−0.0037 (9)−0.0071 (10)
C8A0.0269 (11)0.0271 (11)0.0286 (11)−0.0019 (10)−0.0001 (9)−0.0041 (9)
C90.0276 (12)0.0497 (14)0.0343 (13)0.0040 (11)−0.0011 (9)−0.0077 (11)
C100.0280 (12)0.0513 (15)0.0305 (12)0.0089 (11)0.0005 (10)−0.0047 (11)
C10A0.0261 (11)0.0259 (11)0.0263 (11)0.0000 (9)0.0031 (9)0.0028 (9)
C110.0322 (12)0.0457 (14)0.0251 (11)0.0109 (11)0.0018 (9)−0.0012 (10)
C120.0587 (19)0.0487 (17)0.0546 (17)0.0163 (14)0.0060 (14)−0.0166 (13)
C130.0399 (15)0.0696 (19)0.0460 (15)0.0121 (14)0.0175 (12)0.0119 (14)
C140.0599 (17)0.0281 (13)0.0421 (14)−0.0045 (12)−0.0035 (12)0.0017 (11)
C150.0363 (14)0.0662 (18)0.0441 (15)−0.0116 (13)−0.0023 (11)−0.0189 (14)
C160.068 (2)0.0664 (18)0.0338 (13)0.0231 (17)−0.0133 (13)−0.0045 (14)
C170.0352 (13)0.0364 (13)0.0319 (12)0.0016 (11)−0.0017 (10)−0.0013 (10)
C180.0489 (16)0.0560 (17)0.0332 (13)−0.0039 (13)−0.0023 (11)−0.0089 (12)
O10.0341 (9)0.0432 (9)0.0239 (8)−0.0036 (8)−0.0002 (6)−0.0011 (7)
O20.0587 (12)0.0514 (11)0.0372 (9)−0.0160 (10)0.0039 (9)−0.0001 (9)
C1—C21.385 (3)C9—H9A0.9900
C1—C10A1.415 (3)C9—H9B0.9900
C1—C111.526 (3)C10—C10A1.512 (3)
C2—C31.372 (3)C10—H10A0.9900
C2—O11.412 (3)C10—H10B0.9900
C3—C41.381 (3)C11—C131.524 (4)
C3—H30.9500C11—C121.530 (4)
C4—C4A1.398 (3)C11—H111.0000
C4—H40.9500C12—H12A0.9800
C4A—C10A1.406 (3)C12—H12B0.9800
C4A—C4B1.541 (3)C12—H12C0.9800
C4B—C51.543 (3)C13—H13A0.9800
C4B—C141.544 (3)C13—H13B0.9800
C4B—C8A1.553 (3)C13—H13C0.9800
C5—C61.526 (3)C14—H14A0.9800
C5—H5A0.9900C14—H14B0.9800
C5—H5B0.9900C14—H14C0.9800
C6—C71.512 (4)C15—H15A0.9800
C6—H6A0.9900C15—H15B0.9800
C6—H6B0.9900C15—H15C0.9800
C7—C81.532 (3)C16—H16A0.9800
C7—H7A0.9900C16—H16B0.9800
C7—H7B0.9900C16—H16C0.9800
C8—C151.530 (4)C17—O21.193 (3)
C8—C161.533 (4)C17—O11.361 (3)
C8—C8A1.560 (3)C17—C181.496 (3)
C8A—C91.520 (3)C18—H18A0.9800
C8A—H8A1.0000C18—H18B0.9800
C9—C101.516 (3)C18—H18C0.9800
C2—C1—C10A117.49 (18)H9A—C9—H9B108.0
C2—C1—C11121.51 (18)C10A—C10—C9116.61 (19)
C10A—C1—C11120.92 (19)C10A—C10—H10A108.1
C3—C2—C1122.74 (18)C9—C10—H10A108.1
C3—C2—O1118.32 (18)C10A—C10—H10B108.1
C1—C2—O1118.77 (18)C9—C10—H10B108.1
C2—C3—C4119.29 (19)H10A—C10—H10B107.3
C2—C3—H3120.4C4A—C10A—C1120.89 (19)
C4—C3—H3120.4C4A—C10A—C10120.43 (18)
C3—C4—C4A121.18 (19)C1—C10A—C10118.65 (18)
C3—C4—H4119.4C13—C11—C1110.0 (2)
C4A—C4—H4119.4C13—C11—C12111.6 (2)
C4—C4A—C10A118.38 (18)C1—C11—C12115.1 (2)
C4—C4A—C4B119.92 (18)C13—C11—H11106.5
C10A—C4A—C4B121.63 (18)C1—C11—H11106.5
C4A—C4B—C5111.23 (17)C12—C11—H11106.5
C4A—C4B—C14105.79 (18)C11—C12—H12A109.5
C5—C4B—C14108.22 (19)C11—C12—H12B109.5
C4A—C4B—C8A107.92 (17)H12A—C12—H12B109.5
C5—C4B—C8A109.04 (17)C11—C12—H12C109.5
C14—C4B—C8A114.6 (2)H12A—C12—H12C109.5
C6—C5—C4B112.74 (18)H12B—C12—H12C109.5
C6—C5—H5A109.0C11—C13—H13A109.5
C4B—C5—H5A109.0C11—C13—H13B109.5
C6—C5—H5B109.0H13A—C13—H13B109.5
C4B—C5—H5B109.0C11—C13—H13C109.5
H5A—C5—H5B107.8H13A—C13—H13C109.5
C7—C6—C5111.0 (2)H13B—C13—H13C109.5
C7—C6—H6A109.4C4B—C14—H14A109.5
C5—C6—H6A109.4C4B—C14—H14B109.5
C7—C6—H6B109.4H14A—C14—H14B109.5
C5—C6—H6B109.4C4B—C14—H14C109.5
H6A—C6—H6B108.0H14A—C14—H14C109.5
C6—C7—C8114.08 (19)H14B—C14—H14C109.5
C6—C7—H7A108.7C8—C15—H15A109.5
C8—C7—H7A108.7C8—C15—H15B109.5
C6—C7—H7B108.7H15A—C15—H15B109.5
C8—C7—H7B108.7C8—C15—H15C109.5
H7A—C7—H7B107.6H15A—C15—H15C109.5
C15—C8—C7109.6 (2)H15B—C15—H15C109.5
C15—C8—C16107.7 (2)C8—C16—H16A109.5
C7—C8—C16107.9 (2)C8—C16—H16B109.5
C15—C8—C8A114.3 (2)H16A—C16—H16B109.5
C7—C8—C8A109.00 (17)C8—C16—H16C109.5
C16—C8—C8A108.25 (19)H16A—C16—H16C109.5
C9—C8A—C4B109.05 (18)H16B—C16—H16C109.5
C9—C8A—C8113.59 (17)O2—C17—O1123.7 (2)
C4B—C8A—C8117.57 (17)O2—C17—C18126.0 (2)
C9—C8A—H8A105.2O1—C17—C18110.3 (2)
C4B—C8A—H8A105.2C17—C18—H18A109.5
C8—C8A—H8A105.2C17—C18—H18B109.5
C10—C9—C8A111.51 (18)H18A—C18—H18B109.5
C10—C9—H9A109.3C17—C18—H18C109.5
C8A—C9—H9A109.3H18A—C18—H18C109.5
C10—C9—H9B109.3H18B—C18—H18C109.5
C8A—C9—H9B109.3C17—O1—C2117.79 (16)
  8 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Mode of antibacterial action of totarol, a diterpene from Podocarpus nagi.

Authors:  H Haraguchi; S Oike; H Muroi; I Kubo
Journal:  Planta Med       Date:  1996-04       Impact factor: 3.352

3.  Synthesis, biological evaluation and mechanistic studies of totarol amino alcohol derivatives as potential antimalarial agents.

Authors:  Claire Tacon; Eric M Guantai; Peter J Smith; Kelly Chibale
Journal:  Bioorg Med Chem       Date:  2011-12-03       Impact factor: 3.641

4.  Antineoplastic agents. 529. Isolation and structure of nootkastatins 1 and 2 from the Alaskan yellow cedar Chamaecyparis nootkatensis.

Authors:  George R Pettit; Rui Tan; Julian S Northen; Delbert L Herald; Jean-Charles Chapuis; Robin K Pettit
Journal:  J Nat Prod       Date:  2004-09       Impact factor: 4.050

5.  Diterpenoids from Tetraclinis articulata that inhibit various human leukocyte functions.

Authors:  Alejandro F Barrero; José F Quílez del Moral; Rut Lucas; Miguel Payá; Mohamed Akssira; Said Akaad; Fouad Mellouki
Journal:  J Nat Prod       Date:  2003-06       Impact factor: 4.050

6.  A MAS-NMR study of the location of (+)-totarol, a diterpenoid bioactive molecule, in phospholipid model membranes.

Authors:  Angela Bernabeu; S Shapiro; José Villalaín
Journal:  Chem Phys Lipids       Date:  2002-10       Impact factor: 3.329

7.  (4aS,10aS)-7-Hydr-oxy-8-isopropyl-1,1,4a-trimethyl-1,2,3,4,4a,9,10,10a-octa-hydro-phenanthrene: a new diterpenoid compound.

Authors:  Abdellah Zeroual; Noureddine Mazoir; Jean-Claude Daran; Mohamed Akssira; Ahmed Benharref
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-02-20

8.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  8 in total
  2 in total

1.  Crystal structure of (4bS,8aR)-1-isopropyl-4b,8,8-trimethyl-7-oxo-4b,7,8,8a,9,10-hexa-hydro-phenanthren-2-yl acetate.

Authors:  Yassine Laamari; Moulay Youssef Ait Itto; Abdelkhalek Riahi; Sylviane Chevreux; Aziz Auhmani; El Mostafa Ketatni
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2018-04-27

2.  (4bS,8aS)-1-Isopropyl-4b,8,8-trimethyl-4b,5,6,7,8,8a,9,10-octa-hydro-phenan-thren-2-yl benzoate.

Authors:  Radouane Oubabi; Aziz Auhmani; My Youssef Ait Itto; Abdelwahed Auhmani; Jean-Claude Daran
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-07-11
  2 in total

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