Literature DB >> 25242551

Chemomechanical coupling of human mitochondrial F1-ATPase motor.

Toshiharu Suzuki1, Kazumi Tanaka2, Chiaki Wakabayashi3, Ei-ichiro Saita2, Masasuke Yoshida4.   

Abstract

The rotary motor enzyme F1-ATPase (F1) is a catalytic subcomplex of FoF1-ATP synthase that produces most of the ATP in respiring cells. Chemomechanical coupling has been studied extensively for bacterial F1 but very little for mitochondrial F1. Here we report ATP-driven rotation of human mitochondrial F1. A rotor-shaft γ-subunit in the stator α3β3 ring rotates 120° per ATP with three catalytic steps: ATP binding to one β-subunit at 0°, inorganic phosphate (Pi) release from another β-subunit at 65° and ATP hydrolysis on the third β-subunit at 90°. Rotation is often interrupted at 90° by persistent ADP binding and is stalled at 65° by a specific inhibitor azide. A mitochondrial endogenous inhibitor for FoF1-ATP synthase, IF1, blocks rotation at 90°. These features differ from those of bacterial F1, in which both ATP hydrolysis and Pi release occur at around 80°, demonstrating that chemomechanical coupling angles of the γ-subunit are tuned during evolution.

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Year:  2014        PMID: 25242551     DOI: 10.1038/nchembio.1635

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  46 in total

1.  Resolution of distinct rotational substeps by submillisecond kinetic analysis of F1-ATPase.

Authors:  R Yasuda; H Noji; M Yoshida; K Kinosita; H Itoh
Journal:  Nature       Date:  2001-04-19       Impact factor: 49.962

2.  Rotation of Escherichia coli F(1)-ATPase.

Authors:  H Noji; K Häsler; W Junge; K Kinosita; M Yoshida; S Engelbrecht
Journal:  Biochem Biophys Res Commun       Date:  1999-07-14       Impact factor: 3.575

3.  Catalysis and rotation of F1 motor: cleavage of ATP at the catalytic site occurs in 1 ms before 40 degree substep rotation.

Authors:  Katsuya Shimabukuro; Ryohei Yasuda; Eiro Muneyuki; Kiyotaka Y Hara; Kazuhiko Kinosita; Masasuke Yoshida
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-01       Impact factor: 11.205

4.  A research journey with ATP synthase.

Authors:  Paul D Boyer
Journal:  J Biol Chem       Date:  2002-08-13       Impact factor: 5.157

5.  The structure of bovine F1-ATPase complexed with the antibiotic inhibitor aurovertin B.

Authors:  M J van Raaij; J P Abrahams; A G Leslie; J E Walker
Journal:  Proc Natl Acad Sci U S A       Date:  1996-07-09       Impact factor: 11.205

6.  Conformational transitions of subunit epsilon in ATP synthase from thermophilic Bacillus PS3.

Authors:  Boris A Feniouk; Yasuyuki Kato-Yamada; Masasuke Yoshida; Toshiharu Suzuki
Journal:  Biophys J       Date:  2010-02-03       Impact factor: 4.033

7.  The subunit structure of beef heart mitochondrial adenosine triphosphatase. Isolation procedures.

Authors:  A F Knowles; H S Penefsky
Journal:  J Biol Chem       Date:  1972-10-25       Impact factor: 5.157

8.  Inhibitory effect of NaN3 on the F0F1 ATPase of submitochondrial particles as related to nucleotide binding.

Authors:  E Muneyuki; M Makino; H Kamata; Y Kagawa; M Yoshida; H Hirata
Journal:  Biochim Biophys Acta       Date:  1993-08-16

9.  Kinetic mechanism of mitochondrial adenosine triphosphatase. Inhibition by azide and activation by sulphite.

Authors:  E A Vasilyeva; I B Minkov; A F Fitin; A D Vinogradov
Journal:  Biochem J       Date:  1982-01-15       Impact factor: 3.857

10.  Novel features of the rotary catalytic mechanism revealed in the structure of yeast F1 ATPase.

Authors:  Venkataraman Kabaleeswaran; Neeti Puri; John E Walker; Andrew G W Leslie; David M Mueller
Journal:  EMBO J       Date:  2006-11-02       Impact factor: 11.598

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  44 in total

1.  Elasticity, friction, and pathway of γ-subunit rotation in FoF1-ATP synthase.

Authors:  Kei-ichi Okazaki; Gerhard Hummer
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-10       Impact factor: 11.205

Review 2.  Biological Nanomotors with a Revolution, Linear, or Rotation Motion Mechanism.

Authors:  Peixuan Guo; Hiroyuki Noji; Christopher M Yengo; Zhengyi Zhao; Ian Grainge
Journal:  Microbiol Mol Biol Rev       Date:  2016-01-27       Impact factor: 11.056

3.  Mechanism of the αβ conformational change in F1-ATPase after ATP hydrolysis: free-energy simulations.

Authors:  Yuko Ito; Mitsunori Ikeguchi
Journal:  Biophys J       Date:  2015-01-06       Impact factor: 4.033

4.  Crystal structure of subunits D and F in complex gives insight into energy transmission of the eukaryotic V-ATPase from Saccharomyces cerevisiae.

Authors:  Asha Manikkoth Balakrishna; Sandip Basak; Malathy Sony Subramanian Manimekalai; Gerhard Grüber
Journal:  J Biol Chem       Date:  2014-12-12       Impact factor: 5.157

5.  Simple mechanism whereby the F1-ATPase motor rotates with near-perfect chemomechanical energy conversion.

Authors:  Ei-ichiro Saita; Toshiharu Suzuki; Kazuhiko Kinosita; Masasuke Yoshida
Journal:  Proc Natl Acad Sci U S A       Date:  2015-07-20       Impact factor: 11.205

6.  Torque transmission mechanism via DELSEED loop of F1-ATPase.

Authors:  Rikiya Watanabe; Kazuma Koyasu; Huijuan You; Mizue Tanigawara; Hiroyuki Noji
Journal:  Biophys J       Date:  2015-03-10       Impact factor: 4.033

7.  Mechanisms for achieving high speed and efficiency in biomolecular machines.

Authors:  Jason A Wagoner; Ken A Dill
Journal:  Proc Natl Acad Sci U S A       Date:  2019-03-08       Impact factor: 11.205

Review 8.  Control of rotation of the F1FO-ATP synthase nanomotor by an inhibitory α-helix from unfolded ε or intrinsically disordered ζ and IF1 proteins.

Authors:  Francisco Mendoza-Hoffmann; Mariel Zarco-Zavala; Raquel Ortega; José J García-Trejo
Journal:  J Bioenerg Biomembr       Date:  2018-09-28       Impact factor: 2.945

9.  Methodology for the Simulation of Molecular Motors at Different Scales.

Authors:  Abhishek Singharoy; Christophe Chipot
Journal:  J Phys Chem B       Date:  2016-11-30       Impact factor: 2.991

Review 10.  Efficiencies of molecular motors: a comprehensible overview.

Authors:  Chun-Biu Li; Shoichi Toyabe
Journal:  Biophys Rev       Date:  2020-03-13
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