Literature DB >> 32170586

Efficiencies of molecular motors: a comprehensible overview.

Chun-Biu Li1, Shoichi Toyabe2.   

Abstract

Many biological molecular motors can operate specifically and robustly at the highly fluctuating nano-scale. How these molecules achieve such remarkable functions is an intriguing question that requires various notions and quantifications of efficiency associated with the operations and energy transduction of these nano-machines. Here we give a short review of some important concepts of motor efficiencies, including the thermodynamic, Stokes, and generalized and transport efficiencies, as well as some implications provided by the thermodynamic uncertainty relations recently developed in nonequilibrium physics.

Keywords:  Efficiency; Energetic; Molecular motor; Thermodynamic uncertainty relation

Year:  2020        PMID: 32170586      PMCID: PMC7242604          DOI: 10.1007/s12551-020-00672-x

Source DB:  PubMed          Journal:  Biophys Rev        ISSN: 1867-2450


  22 in total

1.  Single kinesin molecules studied with a molecular force clamp.

Authors:  K Visscher; M J Schnitzer; S M Block
Journal:  Nature       Date:  1999-07-08       Impact factor: 49.962

2.  Probing the kinesin reaction cycle with a 2D optical force clamp.

Authors:  Steven M Block; Charles L Asbury; Joshua W Shaevitz; Matthew J Lang
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-18       Impact factor: 11.205

3.  Coupling of rotation and catalysis in F(1)-ATPase revealed by single-molecule imaging and manipulation.

Authors:  Kengo Adachi; Kazuhiro Oiwa; Takayuki Nishizaka; Shou Furuike; Hiroyuki Noji; Hiroyasu Itoh; Masasuke Yoshida; Kazuhiko Kinosita
Journal:  Cell       Date:  2007-07-27       Impact factor: 41.582

4.  Catalysis-enhancement via rotary fluctuation of F1-ATPase.

Authors:  Rikiya Watanabe; Kumiko Hayashi; Hiroshi Ueno; Hiroyuki Noji
Journal:  Biophys J       Date:  2013-11-19       Impact factor: 4.033

5.  Nonequilibrium Energetics of Molecular Motor Kinesin.

Authors:  Takayuki Ariga; Michio Tomishige; Daisuke Mizuno
Journal:  Phys Rev Lett       Date:  2018-11-23       Impact factor: 9.161

6.  Dissipation Bounds All Steady-State Current Fluctuations.

Authors:  Todd R Gingrich; Jordan M Horowitz; Nikolay Perunov; Jeremy L England
Journal:  Phys Rev Lett       Date:  2016-03-21       Impact factor: 9.161

7.  Proof of the finite-time thermodynamic uncertainty relation for steady-state currents.

Authors:  Jordan M Horowitz; Todd R Gingrich
Journal:  Phys Rev E       Date:  2017-08-25       Impact factor: 2.529

8.  Effects of non-equilibrium angle fluctuation on F1-ATPase kinetics induced by temperature increase.

Authors:  Yuji Tamiya; Rikiya Watanabe; Hiroyuki Noji; Chun-Biu Li; Tamiki Komatsuzaki
Journal:  Phys Chem Chem Phys       Date:  2018-01-17       Impact factor: 3.676

9.  Nonequilibrium dissipation-free transport in F₁-ATPase and the thermodynamic role of asymmetric allosterism.

Authors:  Kyogo Kawaguchi; Shin-Ichi Sasa; Takahiro Sagawa
Journal:  Biophys J       Date:  2014-06-03       Impact factor: 4.033

10.  Single-molecule analysis reveals rotational substeps and chemo-mechanical coupling scheme of Enterococcus hirae V1-ATPase.

Authors:  Tatsuya Iida; Yoshihiro Minagawa; Hiroshi Ueno; Fumihiro Kawai; Takeshi Murata; Ryota Iino
Journal:  J Biol Chem       Date:  2019-09-13       Impact factor: 5.157

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  2 in total

Review 1.  Chemical fuels for molecular machinery.

Authors:  Stefan Borsley; Benjamin M W Roberts; David A Leigh
Journal:  Nat Chem       Date:  2022-07-01       Impact factor: 24.274

Review 2.  KIF13A-A Key Regulator of Recycling Endosome Dynamics.

Authors:  Jerrin Mathew Thankachan; Subba Rao Gangi Setty
Journal:  Front Cell Dev Biol       Date:  2022-04-25
  2 in total

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