| Literature DB >> 25221424 |
Abby Sewell1, Jeffrey Dunmire1, Michael Wehmann1, Theresa Rowe1, Rachida Bouhenni1.
Abstract
PURPOSE: To compare the proteomic profile of a clinical isolate of Pseudomonas aeruginosa (P. aeruginosa) obtained from an infected cornea of a contact lens wearer and the laboratory strain P. aeruginosa ATCC 10145.Entities:
Mesh:
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Year: 2014 PMID: 25221424 PMCID: PMC4153424
Source DB: PubMed Journal: Mol Vis ISSN: 1090-0535 Impact factor: 2.367
Figure 1Bar graphs showing pyoverdine, hemolysin, and swimming motility (A), biofilm formation after 24 h incubation at 37 °C (B), and pyocyanin and pyorubin production (C) by ATCC 10145 and the clinical strain. Error bars indicate the standard deviation. The bars represent the average of three to five replicates per group.
Figure 2A bar graph showing the adhesion of ATCC 10145 and the clinical strain to contact lenses. Error bars indicate the standard deviation. The bars represent the average of three replicates per group.
Significantly upregulated proteins in the clinical strain compared to ATCC10145 strain.
| 15596289 | Flagellin type B | 252 | 12 | 4.0551 | 2.81E-49 | 0.00E+00 |
| 15598888 | Lipotoxon F, LptF | 158 | 54 | 1.3040 | 2.79E-09 | 0.000002 |
| 15599933 | Hypothetical protein PA4739 | 138 | 51 | 1.1910 | 2.27E-07 | 0.000139 |
| 116050368 | Hypothetical protein PA14_33310 | 85 | 8 | 3.0288 | 3.46E-14 | 2.25E-11 |
| 15598887 | Hypothetical protein PA3691 | 70 | 4 | 3.6003 | 8.69E-14 | 5.65E-11 |
| 15599895 | Hypothetical protein PA4701 | 66 | 12 | 2.1381 | 4.17E-08 | 0.000026 |
| 116049276 | Hypothetical protein PA14_47120 | 65 | 4 | 3.4950 | 1.24E-12 | 8.01E-10 |
| 116049954 | 3-hydroxybutyrate dehydrogenase | 50 | 12 | 1.7445 | 0.000030 | 0.016786 |
| 15595257 | Osmotically inducible protein OsmC | 45 | 11 | 1.7111 | 0.000092 | 0.049631 |
| 15597196 | Dehydrocarnitine CoA transferase subunit B | 40 | 6 | 2.3227 | 0.000006 | 0.003651 |
| 15597527 | Hypothetical protein PA2331 | 39 | 3 | 3.0944 | 1.74E-07 | 0.000107 |
| 15600253 | Polyhydroxyalkanoate synthesis protein PhaF | 33 | 3 | 2.8600 | 0.000004 | 0.002163 |
| 15595792 | Organic solvent tolerance protein OstA | 27 | 1 | 3.5799 | 0.000003 | 0.001770 |
Abbreviations: RefSeq: Reference sequence, SC: scan count, NLOG-FoldR: normalized log ratio, Np: normalized p value, Adj-NP: adjusted normalized p value *Normalized ratios are calculated from the ratio of the scans (clinical/ATCC10145) adjusted to the ratio of the total scans for all proteins detected in each group.