Literature DB >> 25220308

Reductive genome evolution at both ends of the bacterial population size spectrum.

Bérénice Batut1, Carole Knibbe2, Gabriel Marais3, Vincent Daubin3.   

Abstract

Bacterial genomes show substantial variations in size. The smallest bacterial genomes are those of endocellular symbionts of eukaryotic hosts, which have undergone massive genome reduction and show patterns that are consistent with the degenerative processes that are predicted to occur in species with small effective population sizes. However, similar genome reduction is found in some free-living marine cyanobacteria that are characterized by extremely large populations. In this Opinion article, we discuss the different hypotheses that have been proposed to account for this reductive genome evolution at both ends of the bacterial population size spectrum.

Mesh:

Year:  2014        PMID: 25220308     DOI: 10.1038/nrmicro3331

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


  96 in total

Review 1.  On the origin of mitochondria: a genomics perspective.

Authors:  Siv G E Andersson; Olof Karlberg; Björn Canbäck; Charles G Kurland
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2.  A non-adaptationist perspective on evolution of genomic complexity or the continued dethroning of man.

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Journal:  Cell Cycle       Date:  2004-03-01       Impact factor: 4.534

3.  Comment on "The origins of genome complexity".

Authors:  Vincent Daubin; Nancy A Moran
Journal:  Science       Date:  2004-11-05       Impact factor: 47.728

Review 4.  Ecological genomics of marine picocyanobacteria.

Authors:  D J Scanlan; M Ostrowski; S Mazard; A Dufresne; L Garczarek; W R Hess; A F Post; M Hagemann; I Paulsen; F Partensky
Journal:  Microbiol Mol Biol Rev       Date:  2009-06       Impact factor: 11.056

5.  Nonadaptive evolution of mitochondrial genome size.

Authors:  Bastien Boussau; Jeremy M Brown; Matthew K Fujita
Journal:  Evolution       Date:  2011-05-10       Impact factor: 3.694

6.  Fixation probability of a mutant influenced by random fluctuation of selection intensity.

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Journal:  Genet Res       Date:  1972-02       Impact factor: 1.588

7.  Genomic island variability facilitates Prochlorococcus-virus coexistence.

Authors:  Sarit Avrani; Omri Wurtzel; Itai Sharon; Rotem Sorek; Debbie Lindell
Journal:  Nature       Date:  2011-06-29       Impact factor: 49.962

8.  Estimating population size and transmission bottlenecks in maternally transmitted endosymbiotic bacteria.

Authors:  A Mira; N A Moran
Journal:  Microb Ecol       Date:  2002-06-28       Impact factor: 4.552

9.  Evolution of variation in presence and absence of genes in bacterial pathways.

Authors:  Andrew R Francis; Mark M Tanaka
Journal:  BMC Evol Biol       Date:  2012-04-20       Impact factor: 3.260

10.  Eco-evolutionary dynamics, coding structure and the information threshold.

Authors:  Folkert K de Boer; Paulien Hogeweg
Journal:  BMC Evol Biol       Date:  2010-11-24       Impact factor: 3.260

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  52 in total

1.  Excess of non-conservative amino acid changes in marine bacterioplankton lineages with reduced genomes.

Authors:  Haiwei Luo; Yongjie Huang; Ramunas Stepanauskas; Jijun Tang
Journal:  Nat Microbiol       Date:  2017-06-12       Impact factor: 17.745

2.  New insights into marine group III Euryarchaeota, from dark to light.

Authors:  Jose M Haro-Moreno; Francisco Rodriguez-Valera; Purificación López-García; David Moreira; Ana-Belen Martin-Cuadrado
Journal:  ISME J       Date:  2017-01-13       Impact factor: 10.302

3.  Defining and simulating open-ended novelty: requirements, guidelines, and challenges.

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Journal:  Theory Biosci       Date:  2016-05-19       Impact factor: 1.919

4.  Snowball Earth, population bottleneck and Prochlorococcus evolution.

Authors:  Hao Zhang; Ying Sun; Qinglu Zeng; Sean A Crowe; Haiwei Luo
Journal:  Proc Biol Sci       Date:  2021-11-17       Impact factor: 5.349

5.  Phylogenetic background and habitat drive the genetic diversification of Escherichia coli.

Authors:  Marie Touchon; Amandine Perrin; Jorge André Moura de Sousa; Belinda Vangchhia; Samantha Burn; Claire L O'Brien; Erick Denamur; David Gordon; Eduardo Pc Rocha
Journal:  PLoS Genet       Date:  2020-06-12       Impact factor: 5.917

6.  RNase III Processing of rRNA in the Lyme Disease Spirochete Borrelia burgdorferi.

Authors:  Melissa L Anacker; Dan Drecktrah; Richard D LeCoultre; Meghan Lybecker; D Scott Samuels
Journal:  J Bacteriol       Date:  2018-06-11       Impact factor: 3.490

7.  Comparison of photosynthetic performances of marine picocyanobacteria with different configurations of the oxygen-evolving complex.

Authors:  Frédéric Partensky; Daniella Mella-Flores; Christophe Six; Laurence Garczarek; Mirjam Czjzek; Dominique Marie; Eva Kotabová; Kristina Felcmanová; Ondřej Prášil
Journal:  Photosynth Res       Date:  2018-06-25       Impact factor: 3.573

8.  Prochlorococcus have low global mutation rate and small effective population size.

Authors:  Zhuoyu Chen; Xiaojun Wang; Yu Song; Qinglu Zeng; Yao Zhang; Haiwei Luo
Journal:  Nat Ecol Evol       Date:  2021-12-23       Impact factor: 15.460

Review 9.  Complement and human T cell metabolism: Location, location, location.

Authors:  Erin E West; Natalia Kunz; Claudia Kemper
Journal:  Immunol Rev       Date:  2020-03-12       Impact factor: 10.983

10.  Mechanisms driving genome reduction of a novel Roseobacter lineage.

Authors:  Xiaoyuan Feng; Xiao Chu; Yang Qian; Michael W Henson; V Celeste Lanclos; Fang Qin; Shelby Barnes; Yanlin Zhao; J Cameron Thrash; Haiwei Luo
Journal:  ISME J       Date:  2021-06-18       Impact factor: 10.302

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