Literature DB >> 25218862

New genes contribute to genetic and phenotypic novelties in human evolution.

Yong E Zhang1, Manyuan Long2.   

Abstract

New genes in human genomes have been found relevant in evolution and biology of humans. It was conservatively estimated that the human genome encodes more than 300 human-specific genes and 1000 primate-specific genes. These new arrivals appear to be implicated in brain function and male reproduction. Surprisingly, increasing evidence indicates that they may also bring negative pleiotropic effects, while assuming various possible biological functions as sources of phenotypic novelties, suggesting a non-progressive route for functional evolution. Similar to these fixed new genes, polymorphic new genes were found to contribute to functional evolution within species, for example, with respect to digestion or disease resistance, revealing that new genes can acquire new or diverged functions in its initial stage as prototypic genes. These progresses have provided new opportunities to explore the genetic basis of human biology and human evolutionary history in a new dimension.
Copyright © 2014 Elsevier Ltd. All rights reserved.

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Year:  2014        PMID: 25218862      PMCID: PMC4631527          DOI: 10.1016/j.gde.2014.08.013

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  62 in total

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Authors:  S Blair Hedges; Joel Dudley; Sudhir Kumar
Journal:  Bioinformatics       Date:  2006-10-04       Impact factor: 6.937

Review 2.  The locus of evolution: evo devo and the genetics of adaptation.

Authors:  Hopi E Hoekstra; Jerry A Coyne
Journal:  Evolution       Date:  2007-05       Impact factor: 3.694

3.  Recent de novo origin of human protein-coding genes.

Authors:  David G Knowles; Aoife McLysaght
Journal:  Genome Res       Date:  2009-09-02       Impact factor: 9.043

Review 4.  Exploring the role of copy number variants in human adaptation.

Authors:  Rebecca C Iskow; Omer Gokcumen; Charles Lee
Journal:  Trends Genet       Date:  2012-04-05       Impact factor: 11.639

5.  TBC1D3, a hominoid oncoprotein, is encoded by a cluster of paralogues located on chromosome 17q12.

Authors:  Didier Hodzic; Chen Kong; Marisa J Wainszelbaum; Audra J Charron; Xiong Su; Philip D Stahl
Journal:  Genomics       Date:  2006-07-24       Impact factor: 5.736

6.  Diet and the evolution of human amylase gene copy number variation.

Authors:  George H Perry; Nathaniel J Dominy; Katrina G Claw; Arthur S Lee; Heike Fiegler; Richard Redon; John Werner; Fernando A Villanea; Joanna L Mountain; Rajeev Misra; Nigel P Carter; Charles Lee; Anne C Stone
Journal:  Nat Genet       Date:  2007-09-09       Impact factor: 38.330

7.  Adaptive evolution of young gene duplicates in mammals.

Authors:  Mira V Han; Jeffery P Demuth; Casey L McGrath; Claudio Casola; Matthew W Hahn
Journal:  Genome Res       Date:  2009-05       Impact factor: 9.043

Review 8.  Intergenic lncRNAs and the evolution of gene expression.

Authors:  Ana C Marques; Chris P Ponting
Journal:  Curr Opin Genet Dev       Date:  2014-05-21       Impact factor: 5.578

9.  A whole genome screen for HIV restriction factors.

Authors:  Li Liu; Nidia M M Oliveira; Kelly M Cheney; Corinna Pade; Hanna Dreja; Ann-Marie H Bergin; Viola Borgdorff; David H Beach; Cleo L Bishop; Matthias T Dittmar; Aine McKnight
Journal:  Retrovirology       Date:  2011-11-14       Impact factor: 4.602

10.  Chromosomal gene movements reflect the recent origin and biology of therian sex chromosomes.

Authors:  Lukasz Potrzebowski; Nicolas Vinckenbosch; Ana Claudia Marques; Frédéric Chalmel; Bernard Jégou; Henrik Kaessmann
Journal:  PLoS Biol       Date:  2008-04-01       Impact factor: 8.029

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  19 in total

1.  Evolution of Melanoma Antigen-A11 (MAGEA11) During Primate Phylogeny.

Authors:  Christopher S Willett; Elizabeth M Wilson
Journal:  J Mol Evol       Date:  2018-03-24       Impact factor: 2.395

2.  A Human-Specific α7-Nicotinic Acetylcholine Receptor Gene in Human Leukocytes: Identification, Regulation and the Consequences of CHRFAM7A Expression.

Authors:  Todd W Costantini; Xitong Dang; Maryana V Yurchyshyna; Raul Coimbra; Brian P Eliceiri; Andrew Baird
Journal:  Mol Med       Date:  2015-04-03       Impact factor: 6.354

Review 3.  The evolution of the human genome.

Authors:  Corinne N Simonti; John A Capra
Journal:  Curr Opin Genet Dev       Date:  2015-09-09       Impact factor: 5.578

Review 4.  Expression of evolutionarily novel genes in tumors.

Authors:  A P Kozlov
Journal:  Infect Agent Cancer       Date:  2016-07-19       Impact factor: 2.965

Review 5.  Human Accelerated Regions and Other Human-Specific Sequence Variations in the Context of Evolution and Their Relevance for Brain Development.

Authors:  Anastasia Levchenko; Alexander Kanapin; Anastasia Samsonova; Raul R Gainetdinov
Journal:  Genome Biol Evol       Date:  2018-01-01       Impact factor: 3.416

6.  Structural History of Human SRGAP2 Proteins.

Authors:  Michael Sporny; Julia Guez-Haddad; Annett Kreusch; Sivan Shakartzi; Avi Neznansky; Alice Cross; Michail N Isupov; Britta Qualmann; Michael M Kessels; Yarden Opatowsky
Journal:  Mol Biol Evol       Date:  2017-06-01       Impact factor: 16.240

7.  GenTree, an integrated resource for analyzing the evolution and function of primate-specific coding genes.

Authors:  Yi Shao; Chunyan Chen; Hao Shen; Bin Z He; Daqi Yu; Shuai Jiang; Shilei Zhao; Zhiqiang Gao; Zhenglin Zhu; Xi Chen; Yan Fu; Hua Chen; Ge Gao; Manyuan Long; Yong E Zhang
Journal:  Genome Res       Date:  2019-03-12       Impact factor: 9.043

8.  DNA transposons mediate duplications via transposition-independent and -dependent mechanisms in metazoans.

Authors:  Shengjun Tan; Huijing Ma; Jinbo Wang; Man Wang; Mengxia Wang; Haodong Yin; Yaqiong Zhang; Xinying Zhang; Jieyu Shen; Danyang Wang; Graham L Banes; Zhihua Zhang; Jianmin Wu; Xun Huang; Hua Chen; Siqin Ge; Chun-Long Chen; Yong E Zhang
Journal:  Nat Commun       Date:  2021-07-13       Impact factor: 14.919

9.  New Genes and Functional Innovation in Mammals.

Authors:  José Luis Villanueva-Cañas; Jorge Ruiz-Orera; M Isabel Agea; Maria Gallo; David Andreu; M Mar Albà
Journal:  Genome Biol Evol       Date:  2017-07-01       Impact factor: 3.416

10.  Non-Human Primate iPSC Generation, Cultivation, and Cardiac Differentiation under Chemically Defined Conditions.

Authors:  Michael Stauske; Ignacio Rodriguez Polo; Wadim Haas; Debbra Yasemin Knorr; Thomas Borchert; Katrin Streckfuss-Bömeke; Ralf Dressel; Iris Bartels; Malte Tiburcy; Wolfram-Hubertus Zimmermann; Rüdiger Behr
Journal:  Cells       Date:  2020-05-29       Impact factor: 6.600

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