Literature DB >> 17021158

TimeTree: a public knowledge-base of divergence times among organisms.

S Blair Hedges1, Joel Dudley, Sudhir Kumar.   

Abstract

UNLABELLED: Biologists and other scientists routinely need to know times of divergence between species and to construct phylogenies calibrated to time (timetrees). Published studies reporting time estimates from molecular data have been increasing rapidly, but the data have been largely inaccessible to the greater community of scientists because of their complexity. TimeTree brings these data together in a consistent format and uses a hierarchical structure, corresponding to the tree of life, to maximize their utility. Results are presented and summarized, allowing users to quickly determine the range and robustness of time estimates and the degree of consensus from the published literature. AVAILABILITY: TimeTree is available at http://www.timetree.net

Mesh:

Year:  2006        PMID: 17021158     DOI: 10.1093/bioinformatics/btl505

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  547 in total

1.  Phylogeny, life history, and ecology contribute to differences in amphibian susceptibility to ranaviruses.

Authors:  Jason T Hoverman; Matthew J Gray; Nathan A Haislip; Debra L Miller
Journal:  Ecohealth       Date:  2011-11-10       Impact factor: 3.184

Review 2.  Calcineurin homologous protein: a multifunctional Ca2+-binding protein family.

Authors:  Francesca Di Sole; Komal Vadnagara; Orson W Moe; Victor Babich
Journal:  Am J Physiol Renal Physiol       Date:  2011-12-21

3.  Phylogenetic relatedness as a tool in restoration ecology: a meta-analysis.

Authors:  Miguel Verdú; Lorena Gómez-Aparicio; Alfonso Valiente-Banuet
Journal:  Proc Biol Sci       Date:  2011-12-07       Impact factor: 5.349

4.  Evolutionary meta-analysis of association studies reveals ancient constraints affecting disease marker discovery.

Authors:  Joel T Dudley; Rong Chen; Maxwell Sanderford; Atul J Butte; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2012-03-01       Impact factor: 16.240

5.  A role for host-parasite interactions in the horizontal transfer of transposons across phyla.

Authors:  Clément Gilbert; Sarah Schaack; John K Pace; Paul J Brindley; Cédric Feschotte
Journal:  Nature       Date:  2010-04-29       Impact factor: 49.962

6.  TIR domain-containing adaptor SARM is a late addition to the ongoing microbe-host dialog.

Authors:  Qing Zhang; Christian M Zmasek; Xiaohui Cai; Adam Godzik
Journal:  Dev Comp Immunol       Date:  2010-11-24       Impact factor: 3.636

7.  Age-dependent gain of alternative splice forms and biased duplication explain the relation between splicing and duplication.

Authors:  Julien Roux; Marc Robinson-Rechavi
Journal:  Genome Res       Date:  2010-12-20       Impact factor: 9.043

8.  Local DNA hypomethylation activates genes in rice endosperm.

Authors:  Assaf Zemach; M Yvonne Kim; Pedro Silva; Jessica A Rodrigues; Bradley Dotson; Matthew D Brooks; Daniel Zilberman
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-11       Impact factor: 11.205

9.  Evaluating Phylostratigraphic Evidence for Widespread De Novo Gene Birth in Genome Evolution.

Authors:  Bryan A Moyers; Jianzhi Zhang
Journal:  Mol Biol Evol       Date:  2016-01-11       Impact factor: 16.240

10.  Evolutionary history and metabolic insights of ancient mammalian uricases.

Authors:  James T Kratzer; Miguel A Lanaspa; Michael N Murphy; Christina Cicerchi; Christina L Graves; Peter A Tipton; Eric A Ortlund; Richard J Johnson; Eric A Gaucher
Journal:  Proc Natl Acad Sci U S A       Date:  2014-02-18       Impact factor: 11.205

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