Literature DB >> 25210039

Enzyme promiscuity: engine of evolutionary innovation.

Chetanya Pandya1, Jeremiah D Farelli2, Debra Dunaway-Mariano3, Karen N Allen4.   

Abstract

Catalytic promiscuity and substrate ambiguity are keys to evolvability, which in turn is pivotal to the successful acquisition of novel biological functions. Action on multiple substrates (substrate ambiguity) can be harnessed for performance of functions in the cell that supersede catalysis of a single metabolite. These functions include proofreading, scavenging of nutrients, removal of antimetabolites, balancing of metabolite pools, and establishing system redundancy. In this review, we present examples of enzymes that perform these cellular roles by leveraging substrate ambiguity and then present the structural features that support both specificity and ambiguity. We focus on the phosphatases of the haloalkanoate dehalogenase superfamily and the thioesterases of the hotdog fold superfamily.
© 2014 by The American Society for Biochemistry and Molecular Biology, Inc.

Keywords:  Enzyme Catalysis; Hydrolase; Phosphatase; Protein Evolution; Structural Biology

Mesh:

Substances:

Year:  2014        PMID: 25210039      PMCID: PMC4215207          DOI: 10.1074/jbc.R114.572990

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  66 in total

1.  Protein stability promotes evolvability.

Authors:  Jesse D Bloom; Sy T Labthavikul; Christopher R Otey; Frances H Arnold
Journal:  Proc Natl Acad Sci U S A       Date:  2006-03-31       Impact factor: 11.205

2.  The gene cluster for fluorometabolite biosynthesis in Streptomyces cattleya: a thioesterase confers resistance to fluoroacetyl-coenzyme A.

Authors:  Fanglu Huang; Stephen F Haydock; Dieter Spiteller; Tatiana Mironenko; Tsung-Lin Li; David O'Hagan; Peter F Leadlay; Jonathan B Spencer
Journal:  Chem Biol       Date:  2006-05

3.  Structure, function, and mechanism of the phenylacetate pathway hot dog-fold thioesterase PaaI.

Authors:  Feng Song; Zhihao Zhuang; Lorenzo Finci; Debra Dunaway-Mariano; Ryan Kniewel; John A Buglino; Veronica Solorzano; Jin Wu; Christopher D Lima
Journal:  J Biol Chem       Date:  2006-02-07       Impact factor: 5.157

4.  Structure-guided approach for detecting large domain inserts in protein sequences as illustrated using the haloacid dehalogenase superfamily.

Authors:  Chetanya Pandya; Debra Dunaway-Mariano; Yu Xia; Karen N Allen
Journal:  Proteins       Date:  2014-05-02

5.  Connectivity between catalytic landscapes of the metallo-β-lactamase superfamily.

Authors:  Florian Baier; Nobuhiko Tokuriki
Journal:  J Mol Biol       Date:  2014-04-24       Impact factor: 5.469

6.  Conformational cycling in beta-phosphoglucomutase catalysis: reorientation of the beta-D-glucose 1,6-(Bis)phosphate intermediate.

Authors:  Jianying Dai; Liangbing Wang; Karen N Allen; Peter Radstrom; Debra Dunaway-Mariano
Journal:  Biochemistry       Date:  2006-06-27       Impact factor: 3.162

7.  The crystal structure of bacillus cereus phosphonoacetaldehyde hydrolase: insight into catalysis of phosphorus bond cleavage and catalytic diversification within the HAD enzyme superfamily.

Authors:  M C Morais; W Zhang; A S Baker; G Zhang; D Dunaway-Mariano; K N Allen
Journal:  Biochemistry       Date:  2000-08-29       Impact factor: 3.162

8.  Evolution of structure and function in the o-succinylbenzoate synthase/N-acylamino acid racemase family of the enolase superfamily.

Authors:  Margaret E Glasner; Nima Fayazmanesh; Ranyee A Chiang; Ayano Sakai; Matthew P Jacobson; John A Gerlt; Patricia C Babbitt
Journal:  J Mol Biol       Date:  2006-05-11       Impact factor: 5.469

9.  Crystal structures of the novel cytosolic 5'-nucleotidase IIIB explain its preference for m7GMP.

Authors:  Thomas Monecke; Juliane Buschmann; Piotr Neumann; Elmar Wahle; Ralf Ficner
Journal:  PLoS One       Date:  2014-03-06       Impact factor: 3.240

10.  Structure and catalysis in the Escherichia coli hotdog-fold thioesterase paralogs YdiI and YbdB.

Authors:  Rui Wu; John A Latham; Danqi Chen; Jeremiah Farelli; Hong Zhao; Kaila Matthews; Karen N Allen; Debra Dunaway-Mariano
Journal:  Biochemistry       Date:  2014-07-18       Impact factor: 3.162

View more
  45 in total

1.  Cap-domain closure enables diverse substrate recognition by the C2-type haloacid dehalogenase-like sugar phosphatase Plasmodium falciparum HAD1.

Authors:  Jooyoung Park; Ann M Guggisberg; Audrey R Odom; Niraj H Tolia
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-08-25

Review 2.  Structural and mechanistic aspects of carotenoid cleavage dioxygenases (CCDs).

Authors:  Anahita Daruwalla; Philip D Kiser
Journal:  Biochim Biophys Acta Mol Cell Biol Lipids       Date:  2019-12-23       Impact factor: 4.698

3.  A bioarchitectonic approach to the modular engineering of metabolism.

Authors:  Cheryl A Kerfeld
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-09-26       Impact factor: 6.237

4.  Evolutionary repurposing of a sulfatase: A new Michaelis complex leads to efficient transition state charge offset.

Authors:  Charlotte M Miton; Stefanie Jonas; Gerhard Fischer; Fernanda Duarte; Mark F Mohamed; Bert van Loo; Bálint Kintses; Shina C L Kamerlin; Nobuhiko Tokuriki; Marko Hyvönen; Florian Hollfelder
Journal:  Proc Natl Acad Sci U S A       Date:  2018-07-16       Impact factor: 11.205

5.  The CaspBase: a curated database for evolutionary biochemical studies of caspase functional divergence and ancestral sequence inference.

Authors:  Robert D Grinshpon; Anna Williford; James Titus-McQuillan; A Clay Clark
Journal:  Protein Sci       Date:  2018-10       Impact factor: 6.725

6.  Biosynthesis of Oxetanocin-A Includes a B12-Dependent Radical SAM Enzyme That Can Catalyze both Oxidative Ring Contraction and the Demethylation of SAM.

Authors:  Aoshu Zhong; Yu-Hsuan Lee; Yung-Nan Liu; Hung-Wen Liu
Journal:  Biochemistry       Date:  2021-02-09       Impact factor: 3.162

Review 7.  How enzyme promiscuity and horizontal gene transfer contribute to metabolic innovation.

Authors:  Margaret E Glasner; Dat P Truong; Benjamin C Morse
Journal:  FEBS J       Date:  2020-01-10       Impact factor: 5.542

8.  Introduction to the thematic minireview series on enzyme evolution.

Authors:  Ruma Banerjee
Journal:  J Biol Chem       Date:  2014-09-10       Impact factor: 5.157

9.  Identification of Moonlighting Proteins in Genomes Using Text Mining Techniques.

Authors:  Aashish Jain; Hareesh Gali; Daisuke Kihara
Journal:  Proteomics       Date:  2018-10-10       Impact factor: 3.984

Review 10.  Catalytic scaffolds for phosphoryl group transfer.

Authors:  Karen N Allen; Debra Dunaway-Mariano
Journal:  Curr Opin Struct Biol       Date:  2016-08-13       Impact factor: 6.809

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.