| Literature DB >> 25203004 |
Zi Chen1, Hong-bing Liu1, Chun-hua Yu2, Ying Wang3, Li Wang1, Yong Song1.
Abstract
BACKGROUND: Various studies have assessed the diagnostic accuracy of EGFR mutation-specific antibodies in non-small cell lung cancer (NSCLC). We performed a meta-analysis of existing data to investigate the diagnostic value of mutation-specific antibodies for detection of EGFR mutations in NSCLC.Entities:
Mesh:
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Year: 2014 PMID: 25203004 PMCID: PMC4159133 DOI: 10.1371/journal.pone.0105940
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Figure 1Flow diagram of study selection by using electronic database.
Summary of included studies.
| Reference/year | Country/region | No. | IHC methodology | IHC score criteria | Exon 19 deletion | Exon 21 L858R | Standard | ||||||
| TP | FP | FN | TN | TP | FP | FN | TN | ||||||
| Yu et al (2009) | USA | 244 | TMA | 4 grades, visual scoring | 23 | 0 | 3 | 196 | 24 | 2 | 2 | 193 | Direct sequencing |
| Brevet et al (2010) | USA | 194 | TMA | 4 grades, visual scoring | 23 | 2 | 8 | 161 | 20 | 2 | 1 | 171 | PCR-RFLP and sequenom assays |
| Simonetti et al (2010) | Spain | 78 | Individual slides | 4 grades, visual scoring | 20 | 0 | 9 | 49 | 25 | 0 | 2 | 51 | Fragment analysis, TaqMan assay, and direct sequencing |
| Kawahara et al (2010) | Japan | 60 | Individual slides | 4 grades, visual scoring | 13 | 0 | 8 | 39 | 19 | 1 | 4 | 36 | Direct sequencing |
| Kitamura et al (2010) | Japan | 238 | TMA | 4 grades, visual scoring | 16 | 1 | 25 | 196 | 12 | 6 | 25 | 195 | Direct sequencing, Cycleave PCR, and fragment analysis |
| Ilie et al (2010) | France | 61 | TMA | 4 grades, visual scoring | 9 | 4 | 1 | 47 | 0 | 0 | 0 | 0 | Direct sequencing |
| Kozu et al (2010) | Japan | 577 | TMA | Q score criteria | 57 | 2 | 78 | 440 | 130 | 9 | 42 | 396 | HRMA |
The visual score criteria consider 1+ or more staining as positive.
The visual score criteria consider 2+ or 3+ staining as positive.
Q score was calculated by multiplying the percentage (P, 0–100%) of positive cells by the intensity (I, 0–3) of staining (Q = P*I; maximum = 300) [30].
Abbreviations: IHC, immunohistochemistry; TMA, tissue microarray; AUC, the best area under the ROC curves; TP, true positive; FP, false positive; FN, false negative; TN, true negative; PCR-RFLP, Polymerase chain reaction-restriction fragment length polymorphism; HRMA, high resolution melting analysis.
Characteristics of included studies.
| Reference/year | Blinded design | Consecutive or random | Tissue sample preparation | Quality score | |
| STARD | QUADAS | ||||
| Yu et al (2009) | Yes | Unknown | FFPE | 10 | 11 |
| Brevet et al (2010) | Unknown | Yes | FFPE | 13 | 11 |
| Simonetti et al (2010) | No | Unknown | FFPE | 10 | 12 |
| Kawahara et al (2010) | Unknown | Yes | FFPE | 12 | 11 |
| Kitamura et al (2010) | No | Yes | FFPE/frozen | 12 | 11 |
| Ilie et al (2010) | Unknown | Yes | FFPE/frozen | 14 | 10 |
| Kozu et al (2010) | Unknown | Yes | MFPE/frozen | 15 | 12 |
| Kato et al (2010) | Unknown | Unknown | FFPE | 15 | 12 |
| Hofman et al (2012) | Yes | Yes | FFPE | 12 | 10 |
| Wu et al (2011) | Unknown | Yes | FFPE | 19 | 12 |
| Hasanovic(2012) | Unknown | Yes | FFPE | 13 | 8 |
| Ambrosini-Spaltro et al (2012) | Unknown | Yes | FFPE | 9 | 12 |
| Angulo et al (2012) | Unknown | Yes | FFPE | 12 | 10 |
| Cooper et al (2013) | Yes | Yes | FFPE | 17 | 13 |
| Xiong et al (2013) | Unknown | Yes | FFPE | 17 | 11 |
Abbreviations: FFPE, formalin-fixed paraffin-embedded; MFPE, methanol-fixed paraffin-embedded; STARD, the Standards for Reporting Diagnostic accuracy, QUADAS, the Quality Assessment of Diagnostic Accuracy Studies.
Summary of included studies.
| Reference/year | Country/region | No. | IHC methodology | IHC score criteria | Exon 19 deletion | Exon 21 L858R | Standard | ||||||
| TP | FP | FN | TN | TP | FP | FN | TN | ||||||
| Kato et al (2010) | Japan | 70 | TMA | H score criteria | 9 | 0 | 9 | 52 | 9 | 2 | 3 | 56 | Direct sequencing |
| Hofman et al (2012) | France | 151 | Individual slides | 4 grades, visual scoring | 13 | 3 | 23 | 111 | 4 | 2 | 17 | 122 | Direct sequencing |
| Wu et al (2011) | Chinese Taipei | 143 | Individual slides | Q score criteria | 30 | 5 | 11 | 97 | 38 | 23 | 5 | 77 | Direct sequencing |
| Hasanovic et al (2012) | USA | 145 | Individual slides | 4 grades, visual scoring | 41 | 24 | 0 | 80 | 29 | 15 | 0 | 101 | PCR-RFLP and sequenom assays |
| Ambrosini-Spaltro et al (2012) | Italy | 33 | Individual slides | 4 grades, visual scoring | 6 | 0 | 6 | 21 | 5 | 0 | 1 | 27 | Direct sequencing |
| Angulo et al (2012) | Spain | 89 | Individual slides | 4 grades, visual scoring | 8 | 0 | 3 | 78 | 2 | 0 | 3 | 78 | Direct sequencing |
| Cooper et al (2013) | Austria | 204 | TMA | 4 grades, visual scoring | 7 | 4 | 0 | 193 | 6 | 3 | 1 | 194 | Direct sequencing |
| Xiong et al (2013) | China | 50 | Individual slides | 4 grades, visual scoring | 10 | 0 | 7 | 33 | 13 | 1 | 3 | 33 | Mutant-enriched PCR and direct sequencing |
The visual score criteria consider 1+ or more staining as positive.
The visual score criteria consider 2+ or 3+ staining as positive.
Q score was calculated by multiplying the percentage (P, 0–100%) of positive cells by the intensity (I, 0–3) of staining (Q = P*I; maximum = 300) [30].
H score criteria assessed staining intensity (I, 0–4) multiplied by the percentage (P, 0–100%) of positive cells for each intensity for a final IHC score (H = P*I; maximum = 400) [27].
Abbreviations: IHC, immunohistochemistry; TMA, tissue microarray; AUC, the best area under the ROC curves; TP, true positive; FP, false positive; FN, false negative; TN, true negative; PCR-RFLP, Polymerase chain reaction-restriction fragment length polymorphism; HRMA, high resolution melting analysis.
Figure 2Forest plots for sensitivity (A) and specificity (B) of the anti-E746-A750 antibody in the detecting the EGFR exon 19 deletion.
Sensitivity = 0.60 (95% CI, 0.55–0.64); specificity = 0.98 (95% CI, 0.97–0.98).
Figure 3Forest plots for sensitivity (C) and specificity (D) of the anti-L858R antibody in the detecting the EGFR exon 21 mutation.
Sensitivity = 0.76 (95% CI, 0.71–0.79); specificity = 0.96 (95% CI, 0.95–0.97).
Figure 4Forest plot for the positive likelihood ratio (PLR) (A), the negative likelihood ratio (NLR) (B) and the diagnostic odds ratio (DOR) (C) of the anti-E746-A750 antibody.
PLR (positive likelihood ratio) = 33.50 (95% CI, 13.96–80.39); NLR (negative likelihood ratio) = 0.39 (95% CI, 0.30–0.51); DOR (diagnostic odds ratio) = 111.17 (95% CI, 62.22–198.63).
Figure 5Forest plot for the positive likelihood ratio (PLR) (A), the negative likelihood ratio (NLR) (B) and the diagnostic odds ratio (DOR) (C) of the anti-L858R antibody.
PLR (positive likelihood ratio) = 24.42 (95% CI, 11.66–51.17); NLR (negative likelihood ratio) = 0.22 (95% CI, 0.12–0.39); DOR (diagnostic odds ratio) = 126.66 (95% CI, 54.60–293.82).
Figure 6Summary receiver operating characteristic (SROC) curve for the anti-E746-A750 antibody (A) and the anti-L858R antibody (B) in the diagnosis of EGFR mutation in the 15 included studies.
The anti-E746-A750 antibody: AUC = 0.97, Q* = 0.92; the anti-L858R antibody: AUC = 0.98, Q* = 0.94.
Weighted meta-regression analysis of the effects of methodological and study design on diagnostic value of mutation-specific antibodies.
| Covariates | No. | Coefficient | PDOR(95% CI) |
|
|
| 15 | |||
| STARD score ≥13 | 8 | −1.168 | 0.31 (0.02;4.88) | 0.3392 |
| QUADAS score ≥10 | 13 | 0.159 | 1.17 (0.00;1108.68) | 0.9565 |
| Blinded | 3 | 0.610 | 1.84 (0.22;15.58) | 0.5105 |
| Consecutive or random | 12 | −1.204 | 0.30 (0.03;3.43) | 0.2721 |
| IHC methodology | 6 | 2.488 | 12.04 (0.87;166.99) | 0.0598 |
| IHC score criteria | 8 | 2.209 | 9.11 (0.88;93.87) | 0.0597 |
| Standard | 12 | −1.437 | 0.24 (0.02;2.89) | 0.2087 |
|
| 14 | |||
| STARD score ≥13 | 7 | −1.137 | 0.32 (0.03;3.11) | 0.2546 |
| QUADAS score ≥10 | 12 | 2.879 | 17.81 (0.11;2840.99) | 0.2043 |
| Blinded | 3 | 1.223 | 3.40 (0.52;22.38) | 0.1564 |
| Consecutive or random | 11 | −2.161 | 0.12 (0.02;0.78) | 0.0333 |
| IHC methodology | 6 | 0.680 | 1.97 (0.20;19.54) | 0.4805 |
| IHC score criteria | 7 | 2.704 | 14.94 (1.61;138.51) | 0.0262 |
| Standard | 11 | −2.992 | 0.05 (0.01;0.34) | 0.0102 |
Abbreviations: PDOR, pooled diagnostic odds ratio; CI, confidence interval; STARD, the Standards for Reporting Diagnostic accuracy; QUADAS, the Quality Assessment of Diagnostic Accuracy Studies; IHC, immunohistochemistry.
Potential sources of heterogeneity of sub-group analysis.
| Studies | Sensitivity(95%CI) | Specificity(95%CI) | PLR (95% CI) | NLR (95% CI) | DOR (95% CI) | AUC | |
|
| |||||||
| All studies (15) | 0.60(0.55–0.64) | 0.98(0.97–0.98) | 33.50(13.96–80.39) | 0.39(0.30–0.51) | 111.7(62.22–198.63) | 0.9711 | |
| I-square (%) | 86.8 | 87.9 | 84.6 | 78.6 | 12.6 | ||
| Consecutive or random | Yes (12) | 0.58(0.53–0.63) | 0.97(0.96–0.98) | 26.99(11.03–66.06) | 0.41(0.31–0.55) | 89.92(51.94–155.65) | 0.9686 |
| I-square (%) | 88.2 | 89.0 | 85.0 | 77.1 | 0.1 | ||
| No or Unknown (3) | 0.71(0.59–0.81) | 1.00(0.99–1.00) | 107.87(21.69–536.52) | 0.30(0.15–0.64) | 379.59(55.57–2592.76) | 0.9995 | |
| I-square (%) | 75.4 | 0.0 | 0.0 | 77.3 | 22.2 | ||
| IHC score criteria | Consider 2+ or 3+ staining as positive (7) | 0.76(0.68–0.83) | 0.95(0.92–0.96) | 29.05(6.68–126.31) | 0.34(0.21–0.54) | 184.15(60.47–560.81) | 0.9818 |
| I-square (%) | 83.1 | 91.0 | 84.3 | 64.0 | 0.0 | ||
| Others (8) | 0.53(0.48–0.59) | 0.99(0.98–0.99) | 33.47(15.04–74.44) | 0.43(0.32–0.58) | 104.21(44.93–241.69) | 0.9529 | |
| I-square (%) | 85.5 | 73.3 | 59.5 | 80.7 | 44.2 | ||
| Standard | Direct sequencing (12) | 0.61(0.55–0.67) | 0.98(0.98–0.99) | 26.86(15.76–45.76) | 0.39(0.29–0.53) | 95.07(46.06–196.22) | 0.9657 |
| I-square (%) | 74.9 | 62.1 | 21.1 | 73.4 | 18.8 | ||
| non-Direct sequencing (3) | 0.58(0.51–0.65) | 0.96(0.94–0.97) | 27.48(1.50–503.58) | 0.25(0.07–0.89) | 197.71(72.73–537.46) | 0.9817 | |
| I-square (%) | 96.8 | 97.4 | 95.8 | 91.2 | 0.0 |
Abbreviations: CI, confidence interval; PLR, positive likelihood ratio; NLR, negative likelihood ratio; DOR, diagnostic odds ratio; AUC, area under the receiver operating characteristic curve; IHC, immunohistochemistry.
*PLR (95% CI), NLR (95% CI), and DOR (95% CI) was calculated using random effect model.
Potential sources of heterogeneity of sub-group analysis.
| Studies | Sensitivity(95%CI) | Specificity(95%CI) | PLR (95% CI) | NLR (95% CI) | DOR (95% CI) | AUC | |
|
| |||||||
| All studies (14) | 0.76(0.71–0.79) | 0.96(0.95–097) | 24.42(11.66–51.17) | 0.22(0.12–0.39) | 126.66(54.60–293.82) | 0.9800 | |
| I-square (%) | 87.2 | 86.6 | 85.7 | 93.6 | 66.4 | ||
| Consecutive or random | Yes (11) | 0.73(0.68–0.78) | 0.96(0.95–0.97) | 20.13(9.14–44.35) | 0.25(0.13–0.48) | 92.66(37.73–227.53) | 0.9741 |
| I-square (%) | 88.9 | 88.5 | 86.4 | 94.0 | 65.3 | ||
| No or Unknown (3) | 0.89(0.79–0.96) | 0.99(0.97–1.00) | 49.32(17.11–142.18) | 0.13(0.06–0.30) | 407.34(64.38–2577.22) | 0.9995 | |
| I-square (%) | 21.9 | 30.9 | 18.5 | 35.0 | 49.6 | ||
| IHC score criteria | Consider 2+ or 3+ staining as positive (7) | 0.88(0.80–0.93) | 0.96(0.94–0.98) | 30.11(9.92–91.40) | 0.18(0.08–0.40) | 252.55(91.27–698.81) | 0.9852 |
| I-square (%) | 62.1 | 81.5 | 69.5 | 69.2 | 0.0 | ||
| Others (7) | 0.71(0.66–0.76) | 0.96(0.95–0.97) | 21.25(6.63–68.12) | 0.26(0.12–0.56) | 85.05(26.08–277.37) | 0.9768 | |
| I-square (%) | 91.7 | 90.7 | 91.5 | 96.0 | 80.9 | ||
| Standard | Direct sequencing (11) | 0.70(0.64–0.76) | 0.96(0.95–0.97) | 25.01(9.60–65.14) | 0.26(0.13–0.49) | 95.54(35.98–253.71) | 0.9733 |
| I-square (%) | 86.9 | 86.2 | 82.5 | 92.4 | 63.3 | ||
| non- Direct sequencing (3) | 0.81(0.75–0.86) | 0.96(0.95–0.98) | 25.25(5.50–115.80) | 0.08(0.01–0.54) | 316.51(65.61–1526.79) | 0.9882 | |
| I-square (%) | 89.5 | 91.8 | 92.3 | 75.3 | 50.8 |
Abbreviations: CI, confidence interval; PLR, positive likelihood ratio; NLR, negative likelihood ratio; DOR, diagnostic odds ratio; AUC, area under the receiver operating characteristic curve; IHC, immunohistochemistry.
*PLR (95% CI), NLR (95% CI), and DOR (95% CI) was calculated using random effect model.
Figure 7The funnel plot of publication bias for the anti-E746-A750 antibody (A) and the anti-L858R antibody (B).
There was no significant publication bias (the anti-E746-A750 antibody, P = 0.93; the anti-L858R antibody, P = 0.85).