Literature DB >> 25198166

Structured and disordered facets of the GPCR fold.

A J Venkatakrishnan1, Tilman Flock2, Daniel Estévez Prado3, Matt E Oates4, Julian Gough4, M Madan Babu5.   

Abstract

The seven-transmembrane (7TM) helix fold of G-protein coupled receptors (GPCRs) has been adapted for a wide variety of physiologically important signaling functions. Here, we discuss the diversity in the structured and disordered regions of GPCRs based on the recently published crystal structures and sequence analysis of all human GPCRs. A comparison of the structures of rhodopsin-like receptors (class A), secretin-like receptors (class B), metabotropic receptors (class C) and frizzled receptors (class F) shows that the relative arrangement of the transmembrane helices is conserved across all four GPCR classes although individual receptors can be activated by ligand binding at varying positions within and around the transmembrane helical bundle. A systematic analysis of GPCR sequences reveals the presence of disordered segments in the cytoplasmic side, abundant post-translational modification sites, evidence for alternative splicing and several putative linear peptide motifs that have the potential to mediate interactions with cytosolic proteins. While the structured regions permit the receptor to bind diverse ligands, the disordered regions appear to have an underappreciated role in modulating downstream signaling in response to the cellular state. An integrated paradigm combining the knowledge of structured and disordered regions is imperative for gaining a holistic understanding of the GPCR (un)structure-function relationship.
Copyright © 2014 Elsevier Ltd. All rights reserved.

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Year:  2014        PMID: 25198166     DOI: 10.1016/j.sbi.2014.08.002

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  26 in total

1.  Identification of two novel chicken GPR133 variants and their expression in different tissues.

Authors:  Kai Tian; Qihai Xiao; Xueyou Zhang; Xi Lan; Xiaoling Zhao; Yan Wang; Diyan Li; Huadong Yin; Lin Ye; Qing Zhu
Journal:  Funct Integr Genomics       Date:  2017-06-14       Impact factor: 3.410

2.  Illuminating G-Protein-Coupling Selectivity of GPCRs.

Authors:  Asuka Inoue; Francesco Raimondi; Francois Marie Ngako Kadji; Gurdeep Singh; Takayuki Kishi; Akiharu Uwamizu; Yuki Ono; Yuji Shinjo; Satoru Ishida; Nadia Arang; Kouki Kawakami; J Silvio Gutkind; Junken Aoki; Robert B Russell
Journal:  Cell       Date:  2019-05-31       Impact factor: 41.582

Review 3.  Multi-functionality of proteins involved in GPCR and G protein signaling: making sense of structure-function continuum with intrinsic disorder-based proteoforms.

Authors:  Alexander V Fonin; April L Darling; Irina M Kuznetsova; Konstantin K Turoverov; Vladimir N Uversky
Journal:  Cell Mol Life Sci       Date:  2019-08-19       Impact factor: 9.261

4.  Comparative modeling and docking of chemokine-receptor interactions with Rosetta.

Authors:  Michael J Wedemeyer; Benjamin K Mueller; Brian J Bender; Jens Meiler; Brian F Volkman
Journal:  Biochem Biophys Res Commun       Date:  2020-01-07       Impact factor: 3.575

Review 5.  Extramembranous Regions in G Protein-Coupled Receptors: Cinderella in Receptor Biology?

Authors:  Sreetama Pal; Amitabha Chattopadhyay
Journal:  J Membr Biol       Date:  2019-08-30       Impact factor: 1.843

Review 6.  GPCR drug discovery: integrating solution NMR data with crystal and cryo-EM structures.

Authors:  Ichio Shimada; Takumi Ueda; Yutaka Kofuku; Matthew T Eddy; Kurt Wüthrich
Journal:  Nat Rev Drug Discov       Date:  2018-11-09       Impact factor: 84.694

7.  Can proteins be intrinsically disordered inside a membrane?

Authors:  Magnus Kjaergaard
Journal:  Intrinsically Disord Proteins       Date:  2015-03-02

8.  Combinatorial expression of GPCR isoforms affects signalling and drug responses.

Authors:  Maria Marti-Solano; Stephanie E Crilly; Duccio Malinverni; Christian Munk; Matthew Harris; Abigail Pearce; Tezz Quon; Amanda E Mackenzie; Xusheng Wang; Junmin Peng; Andrew B Tobin; Graham Ladds; Graeme Milligan; David E Gloriam; Manojkumar A Puthenveedu; M Madan Babu
Journal:  Nature       Date:  2020-11-04       Impact factor: 49.962

Review 9.  How do disordered regions achieve comparable functions to structured domains?

Authors:  Natasha S Latysheva; Tilman Flock; Robert J Weatheritt; Sreenivas Chavali; M Madan Babu
Journal:  Protein Sci       Date:  2015-05-15       Impact factor: 6.725

10.  Diverse activation pathways in class A GPCRs converge near the G-protein-coupling region.

Authors:  A J Venkatakrishnan; Xavier Deupi; Guillaume Lebon; Franziska M Heydenreich; Tilman Flock; Tamara Miljus; Santhanam Balaji; Michel Bouvier; Dmitry B Veprintsev; Christopher G Tate; Gebhard F X Schertler; M Madan Babu
Journal:  Nature       Date:  2016-08-15       Impact factor: 49.962

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