Literature DB >> 25173610

Genetically encoded tools for RNA imaging in living cells.

Anna K Rath1, Andrea Rentmeister2.   

Abstract

RNA imaging probes help us investigate how transport and dynamics of RNA contribute to subcellular RNA localization or regulation of gene expression. Out of the plethora of strategies that have been developed to image RNA in living cells, genetically encoded probes are interesting because they can be produced by the cellular machinery and do not require transfection of the cell. These probes can be grouped into fluorophore-binding aptamers and RNA-binding proteins fused to whole or split fluorescent proteins. In this review, we highlight recent developments in the field of genetically encoded probes for RNA imaging and discuss the strengths and limitations of the different approaches.
Copyright © 2014 Elsevier Ltd. All rights reserved.

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Year:  2014        PMID: 25173610     DOI: 10.1016/j.copbio.2014.07.012

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  16 in total

Review 1.  Recent advances in high-performance fluorescent and bioluminescent RNA imaging probes.

Authors:  Yuqiong Xia; Ruili Zhang; Zhongliang Wang; Jie Tian; Xiaoyuan Chen
Journal:  Chem Soc Rev       Date:  2017-05-22       Impact factor: 54.564

Review 2.  mRNA Localization in Plant Cells.

Authors:  Li Tian; Hong-Li Chou; Masako Fukuda; Toshihiro Kumamaru; Thomas W Okita
Journal:  Plant Physiol       Date:  2019-10-14       Impact factor: 8.340

Review 3.  Aptamers in analytics.

Authors:  Muslum Ilgu; Marit Nilsen-Hamilton
Journal:  Analyst       Date:  2016-03-07       Impact factor: 4.616

Review 4.  Applications of Cas9 as an RNA-programmed RNA-binding protein.

Authors:  David A Nelles; Mark Y Fang; Stefan Aigner; Gene W Yeo
Journal:  Bioessays       Date:  2015-04-16       Impact factor: 4.345

5.  Long-term imaging of individual mRNA molecules in living cells.

Authors:  Yue Guo; Robin E C Lee
Journal:  Cell Rep Methods       Date:  2022-05-25

Review 6.  Covalent labeling of nucleic acids.

Authors:  Nils Klöcker; Florian P Weissenboeck; Andrea Rentmeister
Journal:  Chem Soc Rev       Date:  2020-10-21       Impact factor: 54.564

7.  SRB-2: a promiscuous rainbow aptamer for live-cell RNA imaging.

Authors:  Murat Sunbul; Andres Jäschke
Journal:  Nucleic Acids Res       Date:  2018-10-12       Impact factor: 16.971

Review 8.  Light-Up RNA Aptamers and Their Cognate Fluorogens: From Their Development to Their Applications.

Authors:  Farah Bouhedda; Alexis Autour; Michael Ryckelynck
Journal:  Int J Mol Sci       Date:  2017-12-23       Impact factor: 5.923

9.  Quantum Chemical Calculations and Experimental Validation of the Photoclick Reaction for Fluorescent Labeling of the 5' cap of Eukaryotic mRNAs.

Authors:  Daniela Stummer; Carmen Herrmann; Andrea Rentmeister
Journal:  ChemistryOpen       Date:  2015-02-04       Impact factor: 2.911

10.  Tandem Spinach Array for mRNA Imaging in Living Bacterial Cells.

Authors:  Jichuan Zhang; Jingyi Fei; Benjamin J Leslie; Kyu Young Han; Thomas E Kuhlman; Taekjip Ha
Journal:  Sci Rep       Date:  2015-11-27       Impact factor: 4.379

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