Literature DB >> 26864075

Aptamers in analytics.

Muslum Ilgu1, Marit Nilsen-Hamilton2.   

Abstract

Nucleic acid aptamers are promising alternatives to antibodies in analytics. They are generally obtained through an iterative SELEX protocol that enriches a population of synthetic oligonucleotides to a subset that can recognize the chosen target molecule specifically and avidly. A wide range of targets is recognized by aptamers. Once identified and optimized for performance, aptamers can be reproducibly synthesized and offer other key features, like small size, low cost, sensitivity, specificity, rapid response, stability, and reusability. This makes them excellent options for sensory units in a variety of analytical platforms including those with electrochemical, optical, and mass sensitive transduction detection. Many novel sensing strategies have been developed by rational design to take advantage of the tendency of aptamers to undergo conformational changes upon target/analyte binding and employing the principles of base complementarity that can drive the nucleic acid structure. Despite their many advantages over antibodies, surprisingly few aptamers have yet been integrated into commercially available analytical devices. In this review, we discuss how to select and engineer aptamers for their identified application(s), some of the challenges faced in developing aptamers for analytics and many examples of their reported successful performance as sensors in a variety of analytical platforms.

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Year:  2016        PMID: 26864075      PMCID: PMC5084531          DOI: 10.1039/c5an01824b

Source DB:  PubMed          Journal:  Analyst        ISSN: 0003-2654            Impact factor:   4.616


  204 in total

1.  Aptamer beacons for the direct detection of proteins.

Authors:  N Hamaguchi; A Ellington; M Stanton
Journal:  Anal Biochem       Date:  2001-07-15       Impact factor: 3.365

2.  Automated selection of aptamers against protein targets translated in vitro: from gene to aptamer.

Authors:  J Colin Cox; Andrew Hayhurst; Jay Hesselberth; Travis S Bayer; George Georgiou; Andrew D Ellington
Journal:  Nucleic Acids Res       Date:  2002-10-15       Impact factor: 16.971

3.  Selecting nucleic acids for biosensor applications.

Authors:  Manjula Rajendran; Andrew D Ellington
Journal:  Comb Chem High Throughput Screen       Date:  2002-06       Impact factor: 1.339

4.  Structure-switching signaling aptamers.

Authors:  Razvan Nutiu; Yingfu Li
Journal:  J Am Chem Soc       Date:  2003-04-23       Impact factor: 15.419

5.  Light-switching excimer probes for rapid protein monitoring in complex biological fluids.

Authors:  Chaoyong James Yang; Steffen Jockusch; Marie Vicens; Nicholas J Turro; Weihong Tan
Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-21       Impact factor: 11.205

6.  Contact-mediated quenching for RNA imaging in bacteria with a fluorophore-binding aptamer.

Authors:  Murat Sunbul; Andres Jäschke
Journal:  Angew Chem Int Ed Engl       Date:  2013-10-16       Impact factor: 15.336

Review 7.  Aptamers: multifunctional molecules for biomedical research.

Authors:  Jayeeta Banerjee; Marit Nilsen-Hamilton
Journal:  J Mol Med (Berl)       Date:  2013-09-18       Impact factor: 4.599

8.  A mathematical analysis of multiple-target SELEX.

Authors:  Yeon-Jung Seo; Shiliang Chen; Marit Nilsen-Hamilton; Howard A Levine
Journal:  Bull Math Biol       Date:  2010-01-14       Impact factor: 1.758

9.  Label-free electrochemical aptasensor constructed by layer-by-layer technology for sensitive and selective detection of cancer cells.

Authors:  Tianshu Wang; Jiyang Liu; Xiaoxiao Gu; Dan Li; Jin Wang; Erkang Wang
Journal:  Anal Chim Acta       Date:  2015-05-11       Impact factor: 6.558

Review 10.  Genetically encoded tools for RNA imaging in living cells.

Authors:  Anna K Rath; Andrea Rentmeister
Journal:  Curr Opin Biotechnol       Date:  2014-08-29       Impact factor: 9.740

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  37 in total

1.  Comparison of the free and ligand-bound imino hydrogen exchange rates for the cocaine-binding aptamer.

Authors:  Zachary R Churcher; Miguel A D Neves; Howard N Hunter; Philip E Johnson
Journal:  J Biomol NMR       Date:  2017-05-05       Impact factor: 2.835

2.  Aptamer based vanillin sensor using an ion-sensitive field-effect transistor.

Authors:  Alexander Kuznetsov; Natalia Komarova; Maria Andrianova; Vitaliy Grudtsov; Evgeniy Kuznetsov
Journal:  Mikrochim Acta       Date:  2017-12-02       Impact factor: 5.833

3.  Electrochemical selection of a DNA aptamer, and an impedimetric method for determination of the dedicator of cytokinesis 8 by self-assembly of a thiolated aptamer on a gold electrode.

Authors:  Shimaa Eissa; Ayesha Siddiqua; Raja Chinnappan; Mohammed Zourob
Journal:  Mikrochim Acta       Date:  2019-11-21       Impact factor: 5.833

4.  Bioluminescent Protein-Inhibitor Pair in the Design of a Molecular Aptamer Beacon Biosensing System.

Authors:  Angeliki Moutsiopoulou; David Broyles; Hamdi Joda; Emre Dikici; Avinash Kaur; Angel Kaifer; Sylvia Daunert; Sapna K Deo
Journal:  Anal Chem       Date:  2020-05-21       Impact factor: 6.986

5.  Amplified Detection of the Aptamer-Vanillin Complex with the Use of Bsm DNA Polymerase.

Authors:  Mariia Andrianova; Natalia Komarova; Vitaliy Grudtsov; Evgeniy Kuznetsov; Alexander Kuznetsov
Journal:  Sensors (Basel)       Date:  2017-12-26       Impact factor: 3.576

6.  Refining the Results of a Classical SELEX Experiment by Expanding the Sequence Data Set of an Aptamer Pool Selected for Protein A.

Authors:  Regina Stoltenburg; Beate Strehlitz
Journal:  Int J Mol Sci       Date:  2018-02-24       Impact factor: 5.923

Review 7.  Key Aspects of Nucleic Acid Library Design for in Vitro Selection.

Authors:  Maria A Vorobyeva; Anna S Davydova; Pavel E Vorobjev; Alya G Venyaminova
Journal:  Int J Mol Sci       Date:  2018-02-05       Impact factor: 5.923

8.  Effects of Aptamer to U87-EGFRvIII Cells on the Proliferation, Radiosensitivity, and Radiotherapy of Glioblastoma Cells.

Authors:  Xingmei Zhang; Li Peng; Zhiman Liang; Zhewen Kou; Yue Chen; Guangwei Shi; Xiaowen Li; Yanling Liang; Fang Wang; Yusheng Shi
Journal:  Mol Ther Nucleic Acids       Date:  2018-01-08       Impact factor: 8.886

Review 9.  Aptamer-Modified Magnetic Beads in Biosensing.

Authors:  Harshvardhan Modh; Thomas Scheper; Johanna-Gabriela Walter
Journal:  Sensors (Basel)       Date:  2018-03-30       Impact factor: 3.576

10.  Graphene/gold nanoparticle composites for ultrasensitive and versatile biomarker assay using single-particle inductively-coupled plasma/mass spectrometry.

Authors:  Yuqian Xing; Juan Han; Xu Wu; David T Pierce; Julia Xiaojun Zhao
Journal:  Analyst       Date:  2021-01-07       Impact factor: 4.616

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