| Literature DB >> 22904812 |
Abstract
The title 1:1 co-crystal, C(6)H(12)N(2)·C(6)H(6)O(4), the dicarb-oxy-lic acid mol-ecule is close to planar [r.m.s. deviation from the mean plane = 0.07 (1) Å]. In the crystal, the two mol-ecules are arranged alternately and are linked by O-H⋯N hydrogen bonds, leading to the formation of a chain along the [20-1] direction. The chains are assembled into a two-dimensional framework parallel to the (102) plane through weak C-H⋯O hydrogen bonds between the two types of mol-ecules.Entities:
Year: 2012 PMID: 22904812 PMCID: PMC3414279 DOI: 10.1107/S160053681202942X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H12N2·C6H6O4 | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 5075 reflections | |
| θ = 3.3–28.4° | |
| µ = 0.10 mm−1 | |
| α = 86.258 (1)° | |
| β = 67.376 (1)° | Plate, colourless |
| γ = 80.719 (1)° | 0.20 × 0.12 × 0.10 mm |
| Bruker APEXII CCD diffractometer | 2719 independent reflections |
| Radiation source: fine-focus sealed tube | 2382 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 27.0°, θmin = 2.3° |
| Absorption correction: multi-scan ( | |
| 10893 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2719 reflections | (Δ/σ)max < 0.001 |
| 163 parameters | Δρmax = 0.39 e Å−3 |
| 0 restraints | Δρmin = −0.37 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.76168 (14) | 0.35311 (12) | 0.48540 (14) | 0.0383 (3) | |
| H1 | 0.8660 | 0.3185 | 0.4255 | 0.046* | |
| O2 | 0.70091 (14) | 0.13027 (12) | 0.44151 (14) | 0.0356 (3) | |
| O3 | −0.25828 (14) | 0.13485 (13) | 0.96677 (14) | 0.0384 (3) | |
| H3 | −0.3611 | 0.1718 | 1.0276 | 0.046* | |
| O4 | −0.20125 (14) | 0.37072 (12) | 0.96904 (14) | 0.0370 (3) | |
| C1 | 0.65577 (17) | 0.25426 (15) | 0.50280 (15) | 0.0231 (3) | |
| C2 | 0.46734 (18) | 0.30803 (16) | 0.60830 (16) | 0.0253 (3) | |
| H2 | 0.4375 | 0.4100 | 0.6432 | 0.030* | |
| C3 | 0.33925 (17) | 0.22026 (15) | 0.65586 (15) | 0.0221 (3) | |
| H3A | 0.3679 | 0.1191 | 0.6190 | 0.027* | |
| C4 | 0.15787 (17) | 0.27194 (16) | 0.76141 (15) | 0.0234 (3) | |
| H4 | 0.1279 | 0.3750 | 0.7929 | 0.028* | |
| C5 | 0.03082 (18) | 0.18318 (16) | 0.81672 (16) | 0.0257 (3) | |
| H5 | 0.0598 | 0.0800 | 0.7857 | 0.031* | |
| C6 | −0.15544 (18) | 0.23910 (16) | 0.92551 (16) | 0.0250 (3) | |
| N1 | 1.08788 (14) | 0.27644 (12) | 0.31399 (13) | 0.0215 (3) | |
| N2 | 1.41841 (14) | 0.22012 (13) | 0.14620 (13) | 0.0230 (3) | |
| C7 | 1.11006 (18) | 0.27117 (17) | 0.15051 (16) | 0.0261 (3) | |
| H7A | 1.0583 | 0.3700 | 0.1199 | 0.031* | |
| H7B | 1.0455 | 0.1919 | 0.1366 | 0.031* | |
| C8 | 1.31022 (19) | 0.23589 (17) | 0.04914 (16) | 0.0279 (3) | |
| H8A | 1.3332 | 0.1406 | −0.0081 | 0.033* | |
| H8B | 1.3454 | 0.3187 | −0.0267 | 0.033* | |
| C9 | 1.18363 (18) | 0.39594 (16) | 0.33479 (16) | 0.0252 (3) | |
| H9A | 1.1706 | 0.3982 | 0.4438 | 0.030* | |
| H9B | 1.1302 | 0.4963 | 0.3087 | 0.030* | |
| C10 | 1.38327 (18) | 0.36395 (16) | 0.23055 (17) | 0.0273 (3) | |
| H10A | 1.4159 | 0.4484 | 0.1563 | 0.033* | |
| H10B | 1.4575 | 0.3558 | 0.2936 | 0.033* | |
| C11 | 1.16529 (18) | 0.12776 (15) | 0.35852 (16) | 0.0252 (3) | |
| H11A | 1.1041 | 0.0467 | 0.3432 | 0.030* | |
| H11B | 1.1471 | 0.1290 | 0.4688 | 0.030* | |
| C12 | 1.36674 (19) | 0.09588 (16) | 0.25949 (17) | 0.0274 (3) | |
| H12A | 1.4366 | 0.0877 | 0.3263 | 0.033* | |
| H12B | 1.3943 | −0.0016 | 0.2047 | 0.033* |
| O1 | 0.0164 (5) | 0.0337 (6) | 0.0531 (7) | −0.0076 (4) | 0.0034 (5) | −0.0147 (5) |
| O2 | 0.0232 (5) | 0.0290 (5) | 0.0455 (7) | −0.0053 (4) | −0.0009 (5) | −0.0109 (5) |
| O3 | 0.0190 (5) | 0.0351 (6) | 0.0470 (7) | −0.0081 (4) | 0.0059 (5) | −0.0094 (5) |
| O4 | 0.0240 (5) | 0.0287 (6) | 0.0456 (7) | −0.0033 (4) | 0.0006 (5) | −0.0012 (5) |
| C1 | 0.0176 (6) | 0.0246 (7) | 0.0252 (7) | −0.0034 (5) | −0.0058 (5) | −0.0002 (5) |
| C2 | 0.0195 (7) | 0.0242 (6) | 0.0289 (7) | −0.0022 (5) | −0.0056 (5) | −0.0027 (5) |
| C3 | 0.0177 (6) | 0.0254 (6) | 0.0218 (6) | −0.0017 (5) | −0.0065 (5) | −0.0001 (5) |
| C4 | 0.0178 (6) | 0.0272 (7) | 0.0235 (6) | −0.0019 (5) | −0.0067 (5) | 0.0001 (5) |
| C5 | 0.0191 (7) | 0.0291 (7) | 0.0256 (7) | −0.0029 (5) | −0.0047 (5) | −0.0024 (5) |
| C6 | 0.0179 (6) | 0.0302 (7) | 0.0243 (7) | −0.0040 (5) | −0.0052 (5) | 0.0016 (5) |
| N1 | 0.0163 (5) | 0.0238 (6) | 0.0222 (6) | −0.0039 (4) | −0.0041 (4) | −0.0029 (4) |
| N2 | 0.0168 (5) | 0.0262 (6) | 0.0222 (6) | −0.0035 (4) | −0.0030 (4) | −0.0017 (4) |
| C7 | 0.0216 (7) | 0.0325 (7) | 0.0252 (7) | −0.0033 (5) | −0.0101 (5) | −0.0015 (5) |
| C8 | 0.0245 (7) | 0.0358 (8) | 0.0206 (6) | −0.0039 (6) | −0.0054 (5) | −0.0026 (5) |
| C9 | 0.0201 (6) | 0.0252 (7) | 0.0273 (7) | −0.0042 (5) | −0.0043 (5) | −0.0066 (5) |
| C10 | 0.0197 (6) | 0.0287 (7) | 0.0320 (7) | −0.0079 (5) | −0.0055 (6) | −0.0052 (6) |
| C11 | 0.0218 (7) | 0.0260 (7) | 0.0246 (7) | −0.0059 (5) | −0.0049 (5) | 0.0024 (5) |
| C12 | 0.0229 (7) | 0.0245 (7) | 0.0295 (7) | −0.0007 (5) | −0.0057 (6) | 0.0024 (5) |
| O1—C1 | 1.2925 (16) | N2—C8 | 1.4812 (18) |
| O1—H1 | 0.8400 | N2—C12 | 1.4815 (18) |
| O2—C1 | 1.2177 (17) | N2—C10 | 1.4836 (17) |
| O3—C6 | 1.2944 (17) | C7—C8 | 1.5324 (18) |
| O3—H3 | 0.8400 | C7—H7A | 0.9900 |
| O4—C6 | 1.2217 (18) | C7—H7B | 0.9900 |
| C1—C2 | 1.4924 (18) | C8—H8A | 0.9900 |
| C2—C3 | 1.3284 (19) | C8—H8B | 0.9900 |
| C2—H2 | 0.9500 | C9—C10 | 1.5335 (18) |
| C3—C4 | 1.4477 (18) | C9—H9A | 0.9900 |
| C3—H3A | 0.9500 | C9—H9B | 0.9900 |
| C4—C5 | 1.3301 (19) | C10—H10A | 0.9900 |
| C4—H4 | 0.9500 | C10—H10B | 0.9900 |
| C5—C6 | 1.4931 (18) | C11—C12 | 1.5342 (18) |
| C5—H5 | 0.9500 | C11—H11A | 0.9900 |
| N1—C7 | 1.4800 (17) | C11—H11B | 0.9900 |
| N1—C11 | 1.4825 (17) | C12—H12A | 0.9900 |
| N1—C9 | 1.4835 (16) | C12—H12B | 0.9900 |
| C1—O1—H1 | 109.5 | H7A—C7—H7B | 108.2 |
| C6—O3—H3 | 109.5 | N2—C8—C7 | 109.89 (11) |
| O2—C1—O1 | 125.03 (13) | N2—C8—H8A | 109.7 |
| O2—C1—C2 | 122.44 (12) | C7—C8—H8A | 109.7 |
| O1—C1—C2 | 112.53 (12) | N2—C8—H8B | 109.7 |
| C3—C2—C1 | 123.21 (12) | C7—C8—H8B | 109.7 |
| C3—C2—H2 | 118.4 | H8A—C8—H8B | 108.2 |
| C1—C2—H2 | 118.4 | N1—C9—C10 | 109.92 (10) |
| C2—C3—C4 | 122.93 (13) | N1—C9—H9A | 109.7 |
| C2—C3—H3A | 118.5 | C10—C9—H9A | 109.7 |
| C4—C3—H3A | 118.5 | N1—C9—H9B | 109.7 |
| C5—C4—C3 | 123.67 (13) | C10—C9—H9B | 109.7 |
| C5—C4—H4 | 118.2 | H9A—C9—H9B | 108.2 |
| C3—C4—H4 | 118.2 | N2—C10—C9 | 109.32 (10) |
| C4—C5—C6 | 122.70 (13) | N2—C10—H10A | 109.8 |
| C4—C5—H5 | 118.7 | C9—C10—H10A | 109.8 |
| C6—C5—H5 | 118.7 | N2—C10—H10B | 109.8 |
| O4—C6—O3 | 125.06 (13) | C9—C10—H10B | 109.8 |
| O4—C6—C5 | 121.79 (12) | H10A—C10—H10B | 108.3 |
| O3—C6—C5 | 113.15 (12) | N1—C11—C12 | 109.41 (10) |
| C7—N1—C11 | 109.23 (10) | N1—C11—H11A | 109.8 |
| C7—N1—C9 | 109.70 (11) | C12—C11—H11A | 109.8 |
| C11—N1—C9 | 108.99 (10) | N1—C11—H11B | 109.8 |
| C8—N2—C12 | 109.88 (11) | C12—C11—H11B | 109.8 |
| C8—N2—C10 | 109.04 (11) | H11A—C11—H11B | 108.2 |
| C12—N2—C10 | 108.85 (11) | N2—C12—C11 | 109.83 (11) |
| N1—C7—C8 | 109.49 (11) | N2—C12—H12A | 109.7 |
| N1—C7—H7A | 109.8 | C11—C12—H12A | 109.7 |
| C8—C7—H7A | 109.8 | N2—C12—H12B | 109.7 |
| N1—C7—H7B | 109.8 | C11—C12—H12B | 109.7 |
| C8—C7—H7B | 109.8 | H12A—C12—H12B | 108.2 |
| O2—C1—C2—C3 | 7.1 (2) | N1—C7—C8—N2 | −0.71 (16) |
| O1—C1—C2—C3 | −172.87 (14) | C7—N1—C9—C10 | −58.31 (14) |
| C1—C2—C3—C4 | 178.33 (12) | C11—N1—C9—C10 | 61.24 (14) |
| C2—C3—C4—C5 | −176.16 (14) | C8—N2—C10—C9 | 61.06 (14) |
| C3—C4—C5—C6 | −179.99 (12) | C12—N2—C10—C9 | −58.81 (14) |
| C4—C5—C6—O4 | 0.4 (2) | N1—C9—C10—N2 | −2.11 (16) |
| C4—C5—C6—O3 | −179.44 (13) | C7—N1—C11—C12 | 61.50 (14) |
| C11—N1—C7—C8 | −59.61 (14) | C9—N1—C11—C12 | −58.35 (14) |
| C9—N1—C7—C8 | 59.80 (14) | C8—N2—C12—C11 | −57.63 (14) |
| C12—N2—C8—C7 | 59.59 (14) | C10—N2—C12—C11 | 61.71 (14) |
| C10—N2—C8—C7 | −59.64 (14) | N1—C11—C12—N2 | −2.54 (15) |
| H··· | ||||
| O1—H1···N1 | 0.84 | 1.70 | 2.5299 (14) | 170 |
| O3—H3···N2i | 0.84 | 1.71 | 2.5447 (15) | 170 |
| C3—H3 | 0.95 | 2.53 | 3.4182 (17) | 155 |
| C8—H8 | 0.99 | 2.60 | 3.4255 (18) | 141 |
| C9—H9 | 0.99 | 2.56 | 3.0789 (17) | 113 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1—H1⋯N1 | 0.84 | 1.70 | 2.5299 (14) | 170 |
| O3—H3⋯N2i | 0.84 | 1.71 | 2.5447 (15) | 170 |
| C3—H3 | 0.95 | 2.53 | 3.4182 (17) | 155 |
| C8—H8 | 0.99 | 2.60 | 3.4255 (18) | 141 |
| C9—H9 | 0.99 | 2.56 | 3.0789 (17) | 113 |
Symmetry codes: (i) ; (ii) ; (iii) .