Literature DB >> 22904812

1,4-Diaza-bicyclo-[2.2.2]octa-ne-trans,trans-hexa-2,4-dienedioic acid (1/1).

Suk-Hee Moon, Ki-Min Park.   

Abstract

The title 1:1 co-crystal, C(6)H(12)N(2)·C(6)H(6)O(4), the dicarb-oxy-lic acid mol-ecule is close to planar [r.m.s. deviation from the mean plane = 0.07 (1) Å]. In the crystal, the two mol-ecules are arranged alternately and are linked by O-H⋯N hydrogen bonds, leading to the formation of a chain along the [20-1] direction. The chains are assembled into a two-dimensional framework parallel to the (102) plane through weak C-H⋯O hydrogen bonds between the two types of mol-ecules.

Entities:  

Year:  2012        PMID: 22904812      PMCID: PMC3414279          DOI: 10.1107/S160053681202942X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the applications of co-crystals, see: Bhogala & Nangia (2003 ▶); Gao et al. (2004 ▶); Hori et al. (2009 ▶); Weyna et al. (2009 ▶). For a related structure, see: Moon & Park (2012 ▶).

Experimental

Crystal data

C6H12N2·C6H6O4 M = 254.28 Triclinic, a = 8.1547 (2) Å b = 8.9321 (2) Å c = 9.4028 (2) Å α = 86.258 (1)° β = 67.376 (1)° γ = 80.719 (1)° V = 623.90 (2) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 173 K 0.20 × 0.12 × 0.10 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.980, T max = 0.990 10893 measured reflections 2719 independent reflections 2382 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.125 S = 1.06 2719 reflections 163 parameters H-atom parameters constrained Δρmax = 0.39 e Å−3 Δρmin = −0.37 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681202942X/wn2482sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681202942X/wn2482Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681202942X/wn2482Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H12N2·C6H6O4Z = 2
Mr = 254.28F(000) = 272
Triclinic, P1Dx = 1.354 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.1547 (2) ÅCell parameters from 5075 reflections
b = 8.9321 (2) Åθ = 3.3–28.4°
c = 9.4028 (2) ŵ = 0.10 mm1
α = 86.258 (1)°T = 173 K
β = 67.376 (1)°Plate, colourless
γ = 80.719 (1)°0.20 × 0.12 × 0.10 mm
V = 623.90 (2) Å3
Bruker APEXII CCD diffractometer2719 independent reflections
Radiation source: fine-focus sealed tube2382 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.024
φ and ω scansθmax = 27.0°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −10→9
Tmin = 0.980, Tmax = 0.990k = −11→11
10893 measured reflectionsl = −12→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.125H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0641P)2 + 0.2432P] where P = (Fo2 + 2Fc2)/3
2719 reflections(Δ/σ)max < 0.001
163 parametersΔρmax = 0.39 e Å3
0 restraintsΔρmin = −0.37 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.76168 (14)0.35311 (12)0.48540 (14)0.0383 (3)
H10.86600.31850.42550.046*
O20.70091 (14)0.13027 (12)0.44151 (14)0.0356 (3)
O3−0.25828 (14)0.13485 (13)0.96677 (14)0.0384 (3)
H3−0.36110.17181.02760.046*
O4−0.20125 (14)0.37072 (12)0.96904 (14)0.0370 (3)
C10.65577 (17)0.25426 (15)0.50280 (15)0.0231 (3)
C20.46734 (18)0.30803 (16)0.60830 (16)0.0253 (3)
H20.43750.41000.64320.030*
C30.33925 (17)0.22026 (15)0.65586 (15)0.0221 (3)
H3A0.36790.11910.61900.027*
C40.15787 (17)0.27194 (16)0.76141 (15)0.0234 (3)
H40.12790.37500.79290.028*
C50.03082 (18)0.18318 (16)0.81672 (16)0.0257 (3)
H50.05980.08000.78570.031*
C6−0.15544 (18)0.23910 (16)0.92551 (16)0.0250 (3)
N11.08788 (14)0.27644 (12)0.31399 (13)0.0215 (3)
N21.41841 (14)0.22012 (13)0.14620 (13)0.0230 (3)
C71.11006 (18)0.27117 (17)0.15051 (16)0.0261 (3)
H7A1.05830.37000.11990.031*
H7B1.04550.19190.13660.031*
C81.31022 (19)0.23589 (17)0.04914 (16)0.0279 (3)
H8A1.33320.1406−0.00810.033*
H8B1.34540.3187−0.02670.033*
C91.18363 (18)0.39594 (16)0.33479 (16)0.0252 (3)
H9A1.17060.39820.44380.030*
H9B1.13020.49630.30870.030*
C101.38327 (18)0.36395 (16)0.23055 (17)0.0273 (3)
H10A1.41590.44840.15630.033*
H10B1.45750.35580.29360.033*
C111.16529 (18)0.12776 (15)0.35852 (16)0.0252 (3)
H11A1.10410.04670.34320.030*
H11B1.14710.12900.46880.030*
C121.36674 (19)0.09588 (16)0.25949 (17)0.0274 (3)
H12A1.43660.08770.32630.033*
H12B1.3943−0.00160.20470.033*
U11U22U33U12U13U23
O10.0164 (5)0.0337 (6)0.0531 (7)−0.0076 (4)0.0034 (5)−0.0147 (5)
O20.0232 (5)0.0290 (5)0.0455 (7)−0.0053 (4)−0.0009 (5)−0.0109 (5)
O30.0190 (5)0.0351 (6)0.0470 (7)−0.0081 (4)0.0059 (5)−0.0094 (5)
O40.0240 (5)0.0287 (6)0.0456 (7)−0.0033 (4)0.0006 (5)−0.0012 (5)
C10.0176 (6)0.0246 (7)0.0252 (7)−0.0034 (5)−0.0058 (5)−0.0002 (5)
C20.0195 (7)0.0242 (6)0.0289 (7)−0.0022 (5)−0.0056 (5)−0.0027 (5)
C30.0177 (6)0.0254 (6)0.0218 (6)−0.0017 (5)−0.0065 (5)−0.0001 (5)
C40.0178 (6)0.0272 (7)0.0235 (6)−0.0019 (5)−0.0067 (5)0.0001 (5)
C50.0191 (7)0.0291 (7)0.0256 (7)−0.0029 (5)−0.0047 (5)−0.0024 (5)
C60.0179 (6)0.0302 (7)0.0243 (7)−0.0040 (5)−0.0052 (5)0.0016 (5)
N10.0163 (5)0.0238 (6)0.0222 (6)−0.0039 (4)−0.0041 (4)−0.0029 (4)
N20.0168 (5)0.0262 (6)0.0222 (6)−0.0035 (4)−0.0030 (4)−0.0017 (4)
C70.0216 (7)0.0325 (7)0.0252 (7)−0.0033 (5)−0.0101 (5)−0.0015 (5)
C80.0245 (7)0.0358 (8)0.0206 (6)−0.0039 (6)−0.0054 (5)−0.0026 (5)
C90.0201 (6)0.0252 (7)0.0273 (7)−0.0042 (5)−0.0043 (5)−0.0066 (5)
C100.0197 (6)0.0287 (7)0.0320 (7)−0.0079 (5)−0.0055 (6)−0.0052 (6)
C110.0218 (7)0.0260 (7)0.0246 (7)−0.0059 (5)−0.0049 (5)0.0024 (5)
C120.0229 (7)0.0245 (7)0.0295 (7)−0.0007 (5)−0.0057 (6)0.0024 (5)
O1—C11.2925 (16)N2—C81.4812 (18)
O1—H10.8400N2—C121.4815 (18)
O2—C11.2177 (17)N2—C101.4836 (17)
O3—C61.2944 (17)C7—C81.5324 (18)
O3—H30.8400C7—H7A0.9900
O4—C61.2217 (18)C7—H7B0.9900
C1—C21.4924 (18)C8—H8A0.9900
C2—C31.3284 (19)C8—H8B0.9900
C2—H20.9500C9—C101.5335 (18)
C3—C41.4477 (18)C9—H9A0.9900
C3—H3A0.9500C9—H9B0.9900
C4—C51.3301 (19)C10—H10A0.9900
C4—H40.9500C10—H10B0.9900
C5—C61.4931 (18)C11—C121.5342 (18)
C5—H50.9500C11—H11A0.9900
N1—C71.4800 (17)C11—H11B0.9900
N1—C111.4825 (17)C12—H12A0.9900
N1—C91.4835 (16)C12—H12B0.9900
C1—O1—H1109.5H7A—C7—H7B108.2
C6—O3—H3109.5N2—C8—C7109.89 (11)
O2—C1—O1125.03 (13)N2—C8—H8A109.7
O2—C1—C2122.44 (12)C7—C8—H8A109.7
O1—C1—C2112.53 (12)N2—C8—H8B109.7
C3—C2—C1123.21 (12)C7—C8—H8B109.7
C3—C2—H2118.4H8A—C8—H8B108.2
C1—C2—H2118.4N1—C9—C10109.92 (10)
C2—C3—C4122.93 (13)N1—C9—H9A109.7
C2—C3—H3A118.5C10—C9—H9A109.7
C4—C3—H3A118.5N1—C9—H9B109.7
C5—C4—C3123.67 (13)C10—C9—H9B109.7
C5—C4—H4118.2H9A—C9—H9B108.2
C3—C4—H4118.2N2—C10—C9109.32 (10)
C4—C5—C6122.70 (13)N2—C10—H10A109.8
C4—C5—H5118.7C9—C10—H10A109.8
C6—C5—H5118.7N2—C10—H10B109.8
O4—C6—O3125.06 (13)C9—C10—H10B109.8
O4—C6—C5121.79 (12)H10A—C10—H10B108.3
O3—C6—C5113.15 (12)N1—C11—C12109.41 (10)
C7—N1—C11109.23 (10)N1—C11—H11A109.8
C7—N1—C9109.70 (11)C12—C11—H11A109.8
C11—N1—C9108.99 (10)N1—C11—H11B109.8
C8—N2—C12109.88 (11)C12—C11—H11B109.8
C8—N2—C10109.04 (11)H11A—C11—H11B108.2
C12—N2—C10108.85 (11)N2—C12—C11109.83 (11)
N1—C7—C8109.49 (11)N2—C12—H12A109.7
N1—C7—H7A109.8C11—C12—H12A109.7
C8—C7—H7A109.8N2—C12—H12B109.7
N1—C7—H7B109.8C11—C12—H12B109.7
C8—C7—H7B109.8H12A—C12—H12B108.2
O2—C1—C2—C37.1 (2)N1—C7—C8—N2−0.71 (16)
O1—C1—C2—C3−172.87 (14)C7—N1—C9—C10−58.31 (14)
C1—C2—C3—C4178.33 (12)C11—N1—C9—C1061.24 (14)
C2—C3—C4—C5−176.16 (14)C8—N2—C10—C961.06 (14)
C3—C4—C5—C6−179.99 (12)C12—N2—C10—C9−58.81 (14)
C4—C5—C6—O40.4 (2)N1—C9—C10—N2−2.11 (16)
C4—C5—C6—O3−179.44 (13)C7—N1—C11—C1261.50 (14)
C11—N1—C7—C8−59.61 (14)C9—N1—C11—C12−58.35 (14)
C9—N1—C7—C859.80 (14)C8—N2—C12—C11−57.63 (14)
C12—N2—C8—C759.59 (14)C10—N2—C12—C1161.71 (14)
C10—N2—C8—C7−59.64 (14)N1—C11—C12—N2−2.54 (15)
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.841.702.5299 (14)170
O3—H3···N2i0.841.712.5447 (15)170
C3—H3A···O2ii0.952.533.4182 (17)155
C8—H8A···O3ii0.992.603.4255 (18)141
C9—H9A···O1iii0.992.563.0789 (17)113
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯N10.841.702.5299 (14)170
O3—H3⋯N2i 0.841.712.5447 (15)170
C3—H3A⋯O2ii 0.952.533.4182 (17)155
C8—H8A⋯O3ii 0.992.603.4255 (18)141
C9—H9A⋯O1iii 0.992.563.0789 (17)113

Symmetry codes: (i) ; (ii) ; (iii) .

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