Literature DB >> 25157695

Microbial oceanography and the Hawaii Ocean Time-series programme.

David M Karl1, Matthew J Church1.   

Abstract

The Hawaii Ocean Time-series (HOT) programme has been tracking microbial and biogeochemical processes in the North Pacific Subtropical Gyre since October 1988. The near-monthly time series observations have revealed previously undocumented phenomena within a temporally dynamic ecosystem that is vulnerable to climate change. Novel microorganisms, genes and unexpected metabolic pathways have been discovered and are being integrated into our evolving ecological paradigms. Continued research, including higher-frequency observations and at-sea experimentation, will help to provide a comprehensive scientific understanding of microbial processes in the largest biome on Earth.

Mesh：

Year:  2014        PMID： 25157695     DOI： 10.1038/nrmicro3333

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN： 1740-1526            Impact factor:   60.633


  106 in total

1.  Proteorhodopsin phototrophy in the ocean.

Authors:  O Béjà; E N Spudich; J L Spudich; M Leclerc; E F DeLong
Journal:  Nature       Date:  2001-06-14       Impact factor: 49.962

2.  Bacterial photosynthesis in surface waters of the open ocean.

Authors:  Z S Kolber; C L Van Dover; R A Niederman; P G Falkowski
Journal:  Nature       Date:  2000-09-14       Impact factor: 49.962

3.  Ecology of uncultured Prochlorococcus clades revealed through single-cell genomics and biogeographic analysis.

Authors:  Rex R Malmstrom; Sébastien Rodrigue; Katherine H Huang; Libusha Kelly; Suzanne E Kern; Anne Thompson; Sara Roggensack; Paul M Berube; Matthew R Henn; Sallie W Chisholm
Journal:  ISME J       Date:  2012-08-16       Impact factor: 10.302

4.  Early warnings of regime shifts: a whole-ecosystem experiment.

Authors:  S R Carpenter; J J Cole; M L Pace; R Batt; W A Brock; T Cline; J Coloso; J R Hodgson; J F Kitchell; D A Seekell; L Smith; B Weidel
Journal:  Science       Date:  2011-04-28       Impact factor: 47.728

5.  Bacterial vesicles in marine ecosystems.

Authors:  Steven J Biller; Florence Schubotz; Sara E Roggensack; Anne W Thompson; Roger E Summons; Sallie W Chisholm
Journal:  Science       Date:  2014-01-10       Impact factor: 47.728

Review 6.  Ocean acidification: the other CO2 problem.

Authors:  Scott C Doney; Victoria J Fabry; Richard A Feely; Joan A Kleypas
Journal:  Ann Rev Mar Sci       Date:  2009

7.  Response of Prochlorococcus ecotypes to co-culture with diverse marine bacteria.

Authors:  Daniel Sher; Jessie W Thompson; Nadav Kashtan; Laura Croal; Sallie W Chisholm
Journal:  ISME J       Date:  2011-02-17       Impact factor: 10.302

8.  Genome streamlining in a cosmopolitan oceanic bacterium.

Authors:  Stephen J Giovannoni; H James Tripp; Scott Givan; Mircea Podar; Kevin L Vergin; Damon Baptista; Lisa Bibbs; Jonathan Eads; Toby H Richardson; Michiel Noordewier; Michael S Rappé; Jay M Short; James C Carrington; Eric J Mathur
Journal:  Science       Date:  2005-08-19       Impact factor: 47.728

9.  Environmental genome shotgun sequencing of the Sargasso Sea.

Authors:  J Craig Venter; Karin Remington; John F Heidelberg; Aaron L Halpern; Doug Rusch; Jonathan A Eisen; Dongying Wu; Ian Paulsen; Karen E Nelson; William Nelson; Derrick E Fouts; Samuel Levy; Anthony H Knap; Michael W Lomas; Ken Nealson; Owen White; Jeremy Peterson; Jeff Hoffman; Rachel Parsons; Holly Baden-Tillson; Cynthia Pfannkoch; Yu-Hui Rogers; Hamilton O Smith
Journal:  Science       Date:  2004-03-04       Impact factor: 47.728

10.  Streamlining and core genome conservation among highly divergent members of the SAR11 clade.

Authors:  Jana Grote; J Cameron Thrash; Megan J Huggett; Zachary C Landry; Paul Carini; Stephen J Giovannoni; Michael S Rappé
Journal:  MBio       Date:  2012-09-18       Impact factor: 7.867
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  45 in total

1.  Evolutionary radiation of lanthipeptides in marine cyanobacteria.

Authors:  Andres Cubillos-Ruiz; Jessie W Berta-Thompson; Jamie W Becker; Wilfred A van der Donk; Sallie W Chisholm
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-19       Impact factor: 11.205

2.  Resistant microbial cooccurrence patterns inferred by network topology.

Authors:  Sari Peura; Stefan Bertilsson; Roger I Jones; Alexander Eiler
Journal:  Appl Environ Microbiol       Date:  2015-01-09       Impact factor: 4.792

Review 3.  Marine microbial community dynamics and their ecological interpretation.

Authors:  Jed A Fuhrman; Jacob A Cram; David M Needham
Journal:  Nat Rev Microbiol       Date:  2015-02-09       Impact factor: 60.633

4.  Microbial community transcriptional networks are conserved in three domains at ocean basin scales.

Authors:  Frank O Aylward; John M Eppley; Jason M Smith; Francisco P Chavez; Christopher A Scholin; Edward F DeLong
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-09       Impact factor: 11.205

5.  Fundamental differences in diversity and genomic population structure between Atlantic and Pacific Prochlorococcus.

Authors:  Nadav Kashtan; Sara E Roggensack; Jessie W Berta-Thompson; Maor Grinberg; Ramunas Stepanauskas; Sallie W Chisholm
Journal:  ISME J       Date:  2017-05-19       Impact factor: 10.302

6.  Linking patterns of net community production and marine microbial community structure in the western North Atlantic.

Authors:  Seaver Wang; Yajuan Lin; Scott Gifford; Rachel Eveleth; Nicolas Cassar
Journal:  ISME J       Date:  2018-05-01       Impact factor: 10.302

7.  Multi-year assessment of coastal planktonic fungi reveals environmental drivers of diversity and abundance.

Authors:  Joe D Taylor; Michael Cunliffe
Journal:  ISME J       Date:  2016-03-04       Impact factor: 10.302

8.  Microbial production and consumption of hydrocarbons in the global ocean.

Authors:  Connor R Love; Eleanor C Arrington; Kelsey M Gosselin; Christopher M Reddy; Benjamin A S Van Mooy; Robert K Nelson; David L Valentine
Journal:  Nat Microbiol       Date:  2021-02-01       Impact factor: 17.745

9.  Marine microbial metagenomes sampled across space and time.

Authors:  Steven J Biller; Paul M Berube; Keven Dooley; Madeline Williams; Brandon M Satinsky; Thomas Hackl; Shane L Hogle; Allison Coe; Kristin Bergauer; Heather A Bouman; Thomas J Browning; Daniele De Corte; Christel Hassler; Debbie Hulston; Jeremy E Jacquot; Elizabeth W Maas; Thomas Reinthaler; Eva Sintes; Taichi Yokokawa; Sallie W Chisholm
Journal:  Sci Data       Date:  2018-09-04       Impact factor: 6.444

10.  Marine biogenic source of atmospheric organic nitrogen in the subtropical North Atlantic.

Authors:  Katye E Altieri; Sarah E Fawcett; Andrew J Peters; Daniel M Sigman; Meredith G Hastings
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-06       Impact factor: 11.205
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