Literature DB >> 29934639

Linking patterns of net community production and marine microbial community structure in the western North Atlantic.

Seaver Wang1, Yajuan Lin1,2, Scott Gifford3, Rachel Eveleth1,4, Nicolas Cassar5,6.   

Abstract

Marine net community production (NCP) tracks uptake of carbon by plankton communities and its potential transport to depth. Relationships between marine microbial community composition and NCP currently remain unclear despite their importance for assessing how different taxa impact carbon export. We conducted 16 and 18S rRNA gene (rDNA) sequencing on samples collected across the Western North Atlantic in parallel with high-resolution O2/Ar-derived NCP measurements. Using an internal standard technique to estimate in-situ prokaryotic and eukaryotic rDNA abundances per liter, we employed statistical approaches to relate patterns of microbial diversity to NCP. Taxonomic abundances calculated using internal standards provided valuable context to traditional relative abundance metrics. A bloom in the Mid-Atlantic Bight featured high eukaryote abundances with low eukaryotic diversity and was associated with the harmful algal bloom-forming Aureococcus anophagefferens, phagotrophic algae, heterotrophic flagellates, and particle-associated bacteria. These results show that coastal Aureococcus blooms host a distinct community associated with regionally significant peaks in NCP. Meanwhile, weak relationships between taxonomy and NCP in less-productive waters suggest that productivity across much of this region is not linked to specific microplankton taxa.

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Year:  2018        PMID: 29934639      PMCID: PMC6193967          DOI: 10.1038/s41396-018-0163-4

Source DB:  PubMed          Journal:  ISME J        ISSN: 1751-7362            Impact factor:   10.302


  52 in total

1.  The correlation between rDNA copy number and genome size in eukaryotes.

Authors:  Cheryl D Prokopowich; T Ryan Gregory; Teresa J Crease
Journal:  Genome       Date:  2003-02       Impact factor: 2.166

2.  Quantitative analysis of a deeply sequenced marine microbial metatranscriptome.

Authors:  Scott M Gifford; Shalabh Sharma; Johanna M Rinta-Kanto; Mary Ann Moran
Journal:  ISME J       Date:  2010-09-16       Impact factor: 10.302

3.  Prochlorococcus ecotype abundances in the North Atlantic Ocean as revealed by an improved quantitative PCR method.

Authors:  Erik R Zinser; Allison Coe; Zackary I Johnson; Adam C Martiny; Nicholas J Fuller; David J Scanlan; Sallie W Chisholm
Journal:  Appl Environ Microbiol       Date:  2006-01       Impact factor: 4.792

Review 4.  Probing the evolution, ecology and physiology of marine protists using transcriptomics.

Authors:  David A Caron; Harriet Alexander; Andrew E Allen; John M Archibald; E Virginia Armbrust; Charles Bachy; Callum J Bell; Arvind Bharti; Sonya T Dyhrman; Stephanie M Guida; Karla B Heidelberg; Jonathan Z Kaye; Julia Metzner; Sarah R Smith; Alexandra Z Worden
Journal:  Nat Rev Microbiol       Date:  2016-11-21       Impact factor: 60.633

Review 5.  Sizing up metatranscriptomics.

Authors:  Mary Ann Moran; Brandon Satinsky; Scott M Gifford; Haiwei Luo; Adam Rivers; Leong-Keat Chan; Jun Meng; Bryndan P Durham; Chen Shen; Vanessa A Varaljay; Christa B Smith; Patricia L Yager; Brian M Hopkinson
Journal:  ISME J       Date:  2012-08-30       Impact factor: 10.302

6.  Design and Evaluation of Illumina MiSeq-Compatible, 18S rRNA Gene-Specific Primers for Improved Characterization of Mixed Phototrophic Communities.

Authors:  Ian M Bradley; Ameet J Pinto; Jeremy S Guest
Journal:  Appl Environ Microbiol       Date:  2016-09-16       Impact factor: 4.792

7.  Niche of harmful alga Aureococcus anophagefferens revealed through ecogenomics.

Authors:  Christopher J Gobler; Dianna L Berry; Sonya T Dyhrman; Steven W Wilhelm; Asaf Salamov; Alexei V Lobanov; Yan Zhang; Jackie L Collier; Louie L Wurch; Adam B Kustka; Brian D Dill; Manesh Shah; Nathan C VerBerkmoes; Alan Kuo; Astrid Terry; Jasmyn Pangilinan; Erika A Lindquist; Susan Lucas; Ian T Paulsen; Theresa K Hattenrath-Lehmann; Stephanie C Talmage; Elyse A Walker; Florian Koch; Amanda M Burson; Maria Alejandra Marcoval; Ying-Zhong Tang; Gary R Lecleir; Kathryn J Coyne; Gry M Berg; Erin M Bertrand; Mak A Saito; Vadim N Gladyshev; Igor V Grigoriev
Journal:  Proc Natl Acad Sci U S A       Date:  2011-02-23       Impact factor: 11.205

8.  Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species.

Authors:  V Farrelly; F A Rainey; E Stackebrandt
Journal:  Appl Environ Microbiol       Date:  1995-07       Impact factor: 4.792

9.  Diversity and abundance of diazotrophic microorganisms in the South China Sea during intermonsoon.

Authors:  Pia H Moisander; Roxanne A Beinart; Maren Voss; Jonathan P Zehr
Journal:  ISME J       Date:  2008-06-05       Impact factor: 10.302

10.  The variability of the 16S rRNA gene in bacterial genomes and its consequences for bacterial community analyses.

Authors:  Tomáš Větrovský; Petr Baldrian
Journal:  PLoS One       Date:  2013-02-27       Impact factor: 3.240

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  3 in total

1.  Composition and Biogeography of Planktonic Pro- and Eukaryotic Communities in the Atlantic Ocean: Primer Choice Matters.

Authors:  Felix Milke; Selene Sanchez-Garcia; Leon Dlugosch; Jesse McNichol; Jed Fuhrman; Meinhard Simon; Irene Wagner-Döbler
Journal:  Front Microbiol       Date:  2022-06-28       Impact factor: 6.064

2.  Patterns of Relative and Quantitative Abundances of Marine Bacteria in Surface Waters of the Subtropical Northwest Pacific Ocean Estimated With High-Throughput Quantification Sequencing.

Authors:  Jie Kong; Xin Liu; Lei Wang; Hao Huang; Danyun Ou; Jiayu Guo; Edward A Laws; Bangqin Huang
Journal:  Front Microbiol       Date:  2021-01-21       Impact factor: 5.640

3.  Microbial Niche Diversification in the Galápagos Archipelago and Its Response to El Niño.

Authors:  Scott M Gifford; Liang Zhao; Brooke Stemple; Kimberly DeLong; Patricia M Medeiros; Harvey Seim; Adrian Marchetti
Journal:  Front Microbiol       Date:  2020-10-23       Impact factor: 5.640

  3 in total

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