Literature DB >> 25659323

Marine microbial community dynamics and their ecological interpretation.

Jed A Fuhrman1, Jacob A Cram1, David M Needham1.   

Abstract

Recent advances in studying the dynamics of marine microbial communities have shown that the composition of these communities follows predictable patterns and involves complex network interactions, which shed light on the underlying processes regulating these globally important organisms. Such 'holistic' (or organism- and system-based) studies of these communities complement popular reductionist, often culture-based, approaches for understanding organism function one gene or protein at a time. In this Review, we summarize our current understanding of marine microbial community dynamics at various scales, from hours to decades. We also explain how the data illustrate community resilience and seasonality, and reveal interactions among microorganisms.

Mesh:

Year:  2015        PMID: 25659323     DOI: 10.1038/nrmicro3417

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


  94 in total

Review 1.  Long-term oceanographic and ecological research in the Western English Channel.

Authors:  Alan J Southward; Olivia Langmead; Nicholas J Hardman-Mountford; James Aiken; Gerald T Boalch; Paul R Dando; Martin J Genner; Ian Joint; Michael A Kendall; Nicholas C Halliday; Roger P Harris; Rebecca Leaper; Nova Mieszkowska; Robin D Pingree; Anthony J Richardson; David W Sims; Tania Smith; Anthony W Walne; Stephen J Hawkins
Journal:  Adv Mar Biol       Date:  2005       Impact factor: 5.143

2.  Resistance to co-occurring phages enables marine synechococcus communities to coexist with cyanophages abundant in seawater.

Authors:  J B Waterbury; F W Valois
Journal:  Appl Environ Microbiol       Date:  1993-10       Impact factor: 4.792

Review 3.  The bacterial species dilemma and the genomic-phylogenetic species concept.

Authors:  James T Staley
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-11-29       Impact factor: 6.237

4.  Generation of multimillion-sequence 16S rRNA gene libraries from complex microbial communities by assembling paired-end illumina reads.

Authors:  Andrea K Bartram; Michael D J Lynch; Jennifer C Stearns; Gabriel Moreno-Hagelsieb; Josh D Neufeld
Journal:  Appl Environ Microbiol       Date:  2011-04-01       Impact factor: 4.792

5.  Using network analysis to explore co-occurrence patterns in soil microbial communities.

Authors:  Albert Barberán; Scott T Bates; Emilio O Casamayor; Noah Fierer
Journal:  ISME J       Date:  2011-09-08       Impact factor: 10.302

Review 6.  Microbial interactions: from networks to models.

Authors:  Karoline Faust; Jeroen Raes
Journal:  Nat Rev Microbiol       Date:  2012-07-16       Impact factor: 60.633

7.  Tackling soil diversity with the assembly of large, complex metagenomes.

Authors:  Adina Chuang Howe; Janet K Jansson; Stephanie A Malfatti; Susannah G Tringe; James M Tiedje; C Titus Brown
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-14       Impact factor: 11.205

8.  Genomic island variability facilitates Prochlorococcus-virus coexistence.

Authors:  Sarit Avrani; Omri Wurtzel; Itai Sharon; Rotem Sorek; Debbie Lindell
Journal:  Nature       Date:  2011-06-29       Impact factor: 49.962

9.  Targeted sorting of single virus-infected cells of the coccolithophore Emiliania huxleyi.

Authors:  Joaquín Martínez Martínez; Nicole J Poulton; Ramunas Stepanauskas; Michael E Sieracki; William H Wilson
Journal:  PLoS One       Date:  2011-07-26       Impact factor: 3.240

10.  Contrasting life strategies of viruses that infect photo- and heterotrophic bacteria, as revealed by viral tagging.

Authors:  Li Deng; Ann Gregory; Suzan Yilmaz; Bonnie T Poulos; Philip Hugenholtz; Matthew B Sullivan
Journal:  MBio       Date:  2012-10-30       Impact factor: 7.867

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  149 in total

1.  Cross-depth analysis of marine bacterial networks suggests downward propagation of temporal changes.

Authors:  Jacob A Cram; Li C Xia; David M Needham; Rohan Sachdeva; Fengzhu Sun; Jed A Fuhrman
Journal:  ISME J       Date:  2015-05-19       Impact factor: 10.302

2.  A Tripartite Microbial-Environment Network Indicates How Crucial Microbes Influence the Microbial Community Ecology.

Authors:  Yushi Tang; Tianjiao Dai; Zhiguo Su; Kohei Hasegawa; Jinping Tian; Lujun Chen; Donghui Wen
Journal:  Microb Ecol       Date:  2019-08-19       Impact factor: 4.552

3.  Ecological dynamics and co-occurrence among marine phytoplankton, bacteria and myoviruses shows microdiversity matters.

Authors:  David M Needham; Rohan Sachdeva; Jed A Fuhrman
Journal:  ISME J       Date:  2017-04-11       Impact factor: 10.302

Review 4.  Virus-host interactions and their roles in coral reef health and disease.

Authors:  Rebecca Vega Thurber; Jérôme P Payet; Andrew R Thurber; Adrienne M S Correa
Journal:  Nat Rev Microbiol       Date:  2017-01-16       Impact factor: 60.633

5.  Regional synchrony in full-scale activated sludge bioreactors due to deterministic microbial community assembly.

Authors:  James S Griffin; George F Wells
Journal:  ISME J       Date:  2016-12-20       Impact factor: 10.302

6.  Characterising and predicting cyanobacterial blooms in an 8-year amplicon sequencing time course.

Authors:  Nicolas Tromas; Nathalie Fortin; Larbi Bedrani; Yves Terrat; Pedro Cardoso; David Bird; Charles W Greer; B Jesse Shapiro
Journal:  ISME J       Date:  2017-05-19       Impact factor: 10.302

7.  Uncertainty quantification of the effects of biotic interactions on community dynamics from nonlinear time-series data.

Authors:  Simone Cenci; Serguei Saavedra
Journal:  J R Soc Interface       Date:  2018-10-31       Impact factor: 4.118

8.  A strong link between marine microbial community composition and function challenges the idea of functional redundancy.

Authors:  Pierre E Galand; Olivier Pereira; Corentin Hochart; Jean Christophe Auguet; Didier Debroas
Journal:  ISME J       Date:  2018-06-20       Impact factor: 10.302

9.  Bacterial community structure in a sympagic habitat expanding with global warming: brackish ice brine at 85-90 °N.

Authors:  Beatriz Fernández-Gómez; Beatriz Díez; Martin F Polz; José Ignacio Arroyo; Fernando D Alfaro; Germán Marchandon; Cynthia Sanhueza; Laura Farías; Nicole Trefault; Pablo A Marquet; Marco A Molina-Montenegro; Peter Sylvander; Pauline Snoeijs-Leijonmalm
Journal:  ISME J       Date:  2018-09-18       Impact factor: 10.302

Review 10.  Understanding and Engineering Distributed Biochemical Pathways in Microbial Communities.

Authors:  Xinyun Cao; Joshua J Hamilton; Ophelia S Venturelli
Journal:  Biochemistry       Date:  2018-11-20       Impact factor: 3.162

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