Literature DB >> 25147443

LINEs and SINEs of primate evolution.

Miriam K Konkel1, Jerilyn A Walker1, Mark A Batzer1.   

Abstract

Entities:  

Keywords:  mobile elements; phylogenetic; retrotransposon; source element; subfamily

Year:  2010        PMID： 25147443      PMCID： PMC4137791          DOI： 10.1002/evan.20283

Source DB:  PubMed          Journal:  Evol Anthropol        ISSN： 1060-1538


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  140 in total

1.  Characterization of novel Alu- and tRNA-related SINEs from the tree shrew and evolutionary implications of their origins.

Authors:  Hidenori Nishihara; Yohey Terai; Norihiro Okada
Journal:  Mol Biol Evol       Date:  2002-11       Impact factor: 16.240

2.  SVA elements: a hominid-specific retroposon family.

Authors:  Hui Wang; Jinchuan Xing; Deepak Grover; Dale J Hedges; Kyudong Han; Jerilyn A Walker; Mark A Batzer
Journal:  J Mol Biol       Date:  2005-10-19       Impact factor: 5.469

Review 3.  Moving primate genomics beyond the chimpanzee genome.

Authors:  Morris Goodman; Lawrence I Grossman; Derek E Wildman
Journal:  Trends Genet       Date:  2005-09       Impact factor: 11.639

4.  Amplification dynamics of human-specific (HS) Alu family members.

Authors:  M A Batzer; V A Gudi; J C Mena; D W Foltz; R J Herrera; P L Deininger
Journal:  Nucleic Acids Res       Date:  1991-07-11       Impact factor: 16.971

5.  Human L1 retrotransposition: cis preference versus trans complementation.

Authors:  W Wei; N Gilbert; S L Ooi; J F Lawler; E M Ostertag; H H Kazazian; J D Boeke; J V Moran
Journal:  Mol Cell Biol       Date:  2001-02       Impact factor: 4.272

6.  Species-specific homogeneity of the primate Alu family of repeated DNA sequences.

Authors:  G R Daniels; G M Fox; D Loewensteiner; C W Schmid; P L Deininger
Journal:  Nucleic Acids Res       Date:  1983-11-11       Impact factor: 16.971

7.  Dispersion and insertion polymorphism in two small subfamilies of recently amplified human Alu repeats.

Authors:  M A Batzer; C M Rubin; U Hellmann-Blumberg; M Alegria-Hartman; E P Leeflang; J D Stern; H A Bazan; T H Shaikh; P L Deininger; C W Schmid
Journal:  J Mol Biol       Date:  1995-03-31       Impact factor: 5.469

8.  LINE-1 ORF1 protein enhances Alu SINE retrotransposition.

Authors:  Nicholas Wallace; Bradley J Wagstaff; Prescott L Deininger; Astrid M Roy-Engel
Journal:  Gene       Date:  2008-04-24       Impact factor: 3.688

9.  Genetic variation among world populations: inferences from 100 Alu insertion polymorphisms.

Authors:  W Scott Watkins; Alan R Rogers; Christopher T Ostler; Steve Wooding; Michael J Bamshad; Anna-Marie E Brassington; Marion L Carroll; Son V Nguyen; Jerilyn A Walker; B V Ravi Prasad; P Govinda Reddy; Pradipta K Das; Mark A Batzer; Lynn B Jorde
Journal:  Genome Res       Date:  2003-06-12       Impact factor: 9.043

10.  Estimating the phylogeny and divergence times of primates using a supermatrix approach.

Authors:  Helen J Chatterjee; Simon Y W Ho; Ian Barnes; Colin Groves
Journal:  BMC Evol Biol       Date:  2009-10-27       Impact factor: 3.260
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  41 in total

Review 1.  Useful parasites: the evolutionary biology and biotechnology applications of transposable elements.

Authors:  Georgi N Bonchev
Journal:  J Genet       Date:  2016-12       Impact factor: 1.166

2.  A comprehensive analysis of the Baboon-specific full-length LINE-1 retrotransposons.

Authors:  Wooseok Lee; Minhoon Choi; Songmi Kim; Wanxiangfu Tang; Dong Hee Kim; Heui-Soo Kim; Ping Liang; Kyudong Han
Journal:  Genes Genomics       Date:  2019-03-18       Impact factor: 1.839

3.  Alu elements and DNA double-strand break repair.

Authors:  Travis B White; Maria E Morales; Prescott L Deininger
Journal:  Mob Genet Elements       Date:  2015-11-05

4.  Pseudogenes: A Novel Source of Trans-Acting Antisense RNAs.

Authors:  Nicholas C Lister; Per Johnsson; Paul D Waters; Kevin V Morris
Journal:  Methods Mol Biol       Date:  2021

5.  Human L1 Transposition Dynamics Unraveled with Functional Data Analysis.

Authors:  Di Chen; Marzia A Cremona; Zongtai Qi; Robi D Mitra; Francesca Chiaromonte; Kateryna D Makova
Journal:  Mol Biol Evol       Date:  2020-12-16       Impact factor: 16.240

6.  An Alu-based phylogeny of gibbons (hylobatidae).

Authors:  Thomas J Meyer; Adam T McLain; J Michael Oldenburg; Christopher Faulk; Matthew G Bourgeois; Erin M Conlin; Alan R Mootnick; Pieter J de Jong; Christian Roos; Lucia Carbone; Mark A Batzer
Journal:  Mol Biol Evol       Date:  2012-06-07       Impact factor: 16.240

Review 7.  Barrier to Autointegration Factor (BANF1): interwoven roles in nuclear structure, genome integrity, innate immunity, stress responses and progeria.

Authors:  Augusta Jamin; Matthew S Wiebe
Journal:  Curr Opin Cell Biol       Date:  2015-06-10       Impact factor: 8.382

8.  Insertion of an Alu element in a lncRNA leads to primate-specific modulation of alternative splicing.

Authors:  Shanshan Hu; Xiaolin Wang; Ge Shan
Journal:  Nat Struct Mol Biol       Date:  2016-10-03       Impact factor: 15.369

9.  The genomic architecture of NLRP7 is Alu rich and predisposes to disease-associated large deletions.

Authors:  Ramesh Reddy; Ngoc M P Nguyen; Guillaume Sarrabay; Maryam Rezaei; Mayra C G Rivas; Aysenur Kavasoglu; Hakan Berkil; Alaa Elshafey; Ebtesam Abdalla; Kristin P Nunez; Hélène Dreyfus; Merviel Philippe; Zahra Hadipour; Asude Durmaz; Erin E Eaton; Brittany Schubert; Volkan Ulker; Fatemeh Hadipour; Fatemeh Ahmadpour; Isabelle Touitou; Majid Fardaei; Rima Slim
Journal:  Eur J Hum Genet       Date:  2016-03-09       Impact factor: 4.246

10.  A hominid-specific shift in cerebellar expression, upstream retrotransposons, and a potential cis-regulatory mechanism: bioinformatics analyses of the mu-opioid receptor gene.

Authors:  Orna Levran; Eran Even-Tov; Li Zhao
Journal:  Heredity (Edinb)       Date:  2019-11-11       Impact factor: 3.821
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