Literature DB >> 27994207

Useful parasites: the evolutionary biology and biotechnology applications of transposable elements.

Georgi N Bonchev1.   

Abstract

Transposable elements usually comprise the most abundant nongenic fraction of eukaryotic genomes. Because of their capacity to selfreplicate and to induce a wide range of mutations, transposable elements have long been considered as 'parasitic' or 'selfish'. Today, we recognize that the findings about genomic changes affected by transposable elements have considerably altered our view of the ways in which genomes evolve and work. Numerous studies have provided evidences that mobile elements have the potential to act as agents of evolution by increasing, rearranging and diversifying the genetic repertoire of their hosts. With large-scale sequencing becoming increasingly available, more and more scientists come across transposable element sequences in their data. I will provide examples that transposable elements, although having signatures of 'selfish' DNA, play a significant biological role in the maintainance of genome integrity and providing novel regulatoty networks. These features, along with the transpositional and mutagenic capacity to produce a raw genetic diversity, make the genome mobile fraction, a key player in species adaptation and microevolution. The last but not least, transposable elements stand as informative DNA markers that may complement other conventional DNA markers. Altogether, transposable elements represent a promising, but still largely unexplored research niche and deserve to be included into the agenda of molecular ecologists, evolutionary geneticists, conservation biologists and plant breeders.

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Year:  2016        PMID: 27994207     DOI: 10.1007/s12041-016-0702-6

Source DB:  PubMed          Journal:  J Genet        ISSN: 0022-1333            Impact factor:   1.166


  147 in total

Review 1.  It takes two transposons to tango: transposable-element-mediated chromosomal rearrangements.

Authors:  Y H Gray
Journal:  Trends Genet       Date:  2000-10       Impact factor: 11.639

2.  Molecular domestication--more than a sporadic episode in evolution.

Authors:  W J Miller; J F McDonald; D Nouaud; D Anxolabéhère
Journal:  Genetica       Date:  1999       Impact factor: 1.082

3.  The significance of responses of the genome to challenge.

Authors:  B McClintock
Journal:  Science       Date:  1984-11-16       Impact factor: 47.728

4.  Identification of a functional transposon insertion in the maize domestication gene tb1.

Authors:  Anthony Studer; Qiong Zhao; Jeffrey Ross-Ibarra; John Doebley
Journal:  Nat Genet       Date:  2011-09-25       Impact factor: 38.330

5.  The rice Rim2 transcript accumulates in response to Magnaporthe grisea and its predicted protein product shares similarity with TNP2-like proteins encoded by CACTA transposons.

Authors:  Z H He; H T Dong; J X Dong; D B Li; P C Ronald
Journal:  Mol Gen Genet       Date:  2000-09

6.  Dissecting the insecticide-resistance- associated cytochrome P450 gene Cyp6g1.

Authors:  Caroline McCart; Richard H Ffrench-Constant
Journal:  Pest Manag Sci       Date:  2008-06       Impact factor: 4.845

7.  Convergent domestication of pogo-like transposases into centromere-binding proteins in fission yeast and mammals.

Authors:  Claudio Casola; Donald Hucks; Cédric Feschotte
Journal:  Mol Biol Evol       Date:  2007-10-16       Impact factor: 16.240

8.  Do LINEs have a role in X-chromosome inactivation?

Authors:  Mary F Lyon
Journal:  J Biomed Biotechnol       Date:  2006

Review 9.  The impact of transposable elements in genome evolution and genetic instability and their implications in various diseases.

Authors:  Selvam Ayarpadikannan; Heui-Soo Kim
Journal:  Genomics Inform       Date:  2014-09-30

10.  Pogo-like transposases have been repeatedly domesticated into CENP-B-related proteins.

Authors:  Lidia Mateo; Josefa González
Journal:  Genome Biol Evol       Date:  2014-07-24       Impact factor: 3.416

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  2 in total

Review 1.  Retrotransposons in Plant Genomes: Structure, Identification, and Classification through Bioinformatics and Machine Learning.

Authors:  Simon Orozco-Arias; Gustavo Isaza; Romain Guyot
Journal:  Int J Mol Sci       Date:  2019-08-06       Impact factor: 5.923

2.  InpactorDB: A Classified Lineage-Level Plant LTR Retrotransposon Reference Library for Free-Alignment Methods Based on Machine Learning.

Authors:  Simon Orozco-Arias; Paula A Jaimes; Mariana S Candamil; Cristian Felipe Jiménez-Varón; Reinel Tabares-Soto; Gustavo Isaza; Romain Guyot
Journal:  Genes (Basel)       Date:  2021-01-28       Impact factor: 4.096

  2 in total

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