Literature DB >> 18534786

LINE-1 ORF1 protein enhances Alu SINE retrotransposition.

Nicholas Wallace1, Bradley J Wagstaff, Prescott L Deininger, Astrid M Roy-Engel.   

Abstract

Retroelements have contributed over one third of the human genome mass. The currently active LINE-1 (L1) codes for two proteins (ORF1p and ORF2p), both strictly required for retrotransposition. In contrast, the non-coding parasitic SINE (Alu) only appears to need the L1 ORF2p for its own amplification. This requirement was previously determined using a tissue culture assay system in human cells (HeLa). Because HeLa are likely to express functional L1 proteins, it is possible that low levels of endogenous ORF1p are necessary for the observed tagged Alu mobilization. By individually expressing ORF1 and ORF2 proteins from both human (L1RP and LRE3) and rodent (L1A102 and L1spa) L1 sources, we demonstrate that increasing amounts of ORF1 expressing vector enhances tagged Alu mobilization in HeLa cells. In addition, using chicken fibroblast cells as an alternate cell culture source, we confirmed that ORF1p is not strictly required for Alu mobilization in our assay. Supporting our observations in HeLa cells, we find that tagged Alu retrotransposition is improved by supplementation of ORF1p in the cultured chicken cells. We postulate that L1 ORF1p plays either a direct or indirect role in enhancing the interaction between the Alu RNA and the required factors needed for its retrotransposition.

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Year:  2008        PMID: 18534786      PMCID: PMC2491492          DOI: 10.1016/j.gene.2008.04.007

Source DB:  PubMed          Journal:  Gene        ISSN: 0378-1119            Impact factor:   3.688


  53 in total

1.  SVA elements: a hominid-specific retroposon family.

Authors:  Hui Wang; Jinchuan Xing; Deepak Grover; Dale J Hedges; Kyudong Han; Jerilyn A Walker; Mark A Batzer
Journal:  J Mol Biol       Date:  2005-10-19       Impact factor: 5.469

2.  Cis-preferential LINE-1 reverse transcriptase activity in ribonucleoprotein particles.

Authors:  Deanna A Kulpa; John V Moran
Journal:  Nat Struct Mol Biol       Date:  2006-06-18       Impact factor: 15.369

3.  Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition.

Authors:  Q Feng; J V Moran; H H Kazazian; J D Boeke
Journal:  Cell       Date:  1996-11-29       Impact factor: 41.582

4.  Human L1 retrotransposition: cis preference versus trans complementation.

Authors:  W Wei; N Gilbert; S L Ooi; J F Lawler; E M Ostertag; H H Kazazian; J D Boeke; J V Moran
Journal:  Mol Cell Biol       Date:  2001-02       Impact factor: 4.272

5.  Human L1 element target-primed reverse transcription in vitro.

Authors:  Gregory J Cost; Qinghua Feng; Alain Jacquier; Jef D Boeke
Journal:  EMBO J       Date:  2002-11-01       Impact factor: 11.598

6.  Human LINE retrotransposons generate processed pseudogenes.

Authors:  C Esnault; J Maestre; T Heidmann
Journal:  Nat Genet       Date:  2000-04       Impact factor: 38.330

7.  Deletion analysis defines distinct functional domains for protein-protein and nucleic acid interactions in the ORF1 protein of mouse LINE-1.

Authors:  S L Martin; J Li; J A Weisz
Journal:  J Mol Biol       Date:  2000-11-17       Impact factor: 5.469

8.  Chicken repeat 1 (CR1) elements, which define an ancient family of vertebrate non-LTR retrotransposons, contain two closely spaced open reading frames.

Authors:  N B Haas; J M Grabowski; A B Sivitz; J B Burch
Journal:  Gene       Date:  1997-09-15       Impact factor: 3.688

9.  LINE-mediated retrotransposition of marked Alu sequences.

Authors:  Marie Dewannieux; Cécile Esnault; Thierry Heidmann
Journal:  Nat Genet       Date:  2003-08-03       Impact factor: 38.330

10.  RNA truncation by premature polyadenylation attenuates human mobile element activity.

Authors:  Victoria Perepelitsa-Belancio; Prescott Deininger
Journal:  Nat Genet       Date:  2003-11-16       Impact factor: 38.330

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  56 in total

1.  Retrotransposition of marked SVA elements by human L1s in cultured cells.

Authors:  Dustin C Hancks; John L Goodier; Prabhat K Mandal; Ling E Cheung; Haig H Kazazian
Journal:  Hum Mol Genet       Date:  2011-06-02       Impact factor: 6.150

2.  Enrichment of processed pseudogene transcripts in L1-ribonucleoprotein particles.

Authors:  Prabhat K Mandal; Adam D Ewing; Dustin C Hancks; Haig H Kazazian
Journal:  Hum Mol Genet       Date:  2013-05-21       Impact factor: 6.150

3.  Dissection of affinity captured LINE-1 macromolecular complexes.

Authors:  Martin S Taylor; Ilya Altukhov; Kelly R Molloy; Paolo Mita; Hua Jiang; Emily M Adney; Aleksandra Wudzinska; Sana Badri; Dmitry Ischenko; George Eng; Kathleen H Burns; David Fenyö; Brian T Chait; Dmitry Alexeev; Michael P Rout; Jef D Boeke; John LaCava
Journal:  Elife       Date:  2018-01-08       Impact factor: 8.140

4.  Retrotransposons and genetic instability in hepatocellular carcinoma.

Authors:  Ruchi Shukla
Journal:  Hepat Oncol       Date:  2017-07-18

5.  LINEs and SINEs of primate evolution.

Authors:  Miriam K Konkel; Jerilyn A Walker; Mark A Batzer
Journal:  Evol Anthropol       Date:  2010-11-01

6.  Diverse cis factors controlling Alu retrotransposition: what causes Alu elements to die?

Authors:  Matthew S Comeaux; Astrid M Roy-Engel; Dale J Hedges; Prescott L Deininger
Journal:  Genome Res       Date:  2009-03-09       Impact factor: 9.043

Review 7.  The impact of retrotransposons on human genome evolution.

Authors:  Richard Cordaux; Mark A Batzer
Journal:  Nat Rev Genet       Date:  2009-10       Impact factor: 53.242

8.  LINE dancing in the human genome: transposable elements and disease.

Authors:  Victoria P Belancio; Prescott L Deininger; Astrid M Roy-Engel
Journal:  Genome Med       Date:  2009-10-27       Impact factor: 11.117

9.  The RNA polymerase dictates ORF1 requirement and timing of LINE and SINE retrotransposition.

Authors:  Emily N Kroutter; Victoria P Belancio; Bradley J Wagstaff; Astrid M Roy-Engel
Journal:  PLoS Genet       Date:  2009-04-24       Impact factor: 5.917

10.  Biomarkers of lead exposure and DNA methylation within retrotransposons.

Authors:  Robert O Wright; Joel Schwartz; Rosalind J Wright; Valentina Bollati; Letizia Tarantini; Sung Kyun Park; Howard Hu; David Sparrow; Pantel Vokonas; Andrea Baccarelli
Journal:  Environ Health Perspect       Date:  2010-01-11       Impact factor: 9.031

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