| Literature DB >> 25136104 |
Ana Cuervo1, Pablo D Dans2, José L Carrascosa3, Modesto Orozco4, Gabriel Gomila5, Laura Fumagalli6.
Abstract
The electric polarizability of DNA, represented by the dielectric constant, is a key intrinsic property that modulates DNA interaction with effector proteins. Surprisingly, it has so far remained unknown owing to the lack of experimental tools able to access it. Here, we experimentally resolved it by detecting the ultraweak polarization forces of DNA inside single T7 bacteriophages particles using electrostatic force microscopy. In contrast to the common assumption of low-polarizable behavior like proteins (εr ∼ 2-4), we found that the DNA dielectric constant is ∼ 8, considerably higher than the value of ∼ 3 found for capsid proteins. State-of-the-art molecular dynamic simulations confirm the experimental findings, which result in sensibly decreased DNA interaction free energy than normally predicted by Poisson-Boltzmann methods. Our findings reveal a property at the basis of DNA structure and functions that is needed for realistic theoretical descriptions, and illustrate the synergetic power of scanning probe microscopy and theoretical computation techniques.Keywords: DNA packaging; DNA–ligand binding; Poisson–Boltzmann equation; atomic force microscopy; atomistic simulations
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Year: 2014 PMID: 25136104 PMCID: PMC4156767 DOI: 10.1073/pnas.1405702111
Source DB: PubMed Journal: Proc Natl Acad Sci U S A ISSN: 0027-8424 Impact factor: 11.205