Literature DB >> 2742983

Structure of DNA hydration shells studied by Raman spectroscopy.

N J Tao, S M Lindsay, A Rupprecht.   

Abstract

We have used Raman scattering to study the water O-H stretching modes at approximately 3450 and approximately 3220 cm-1 in DNA films as a function of relative humidity (r.h.). The intensity of the 3220-cm-1 band vanishes as the r.h. is decreased from 98% to around 80%, which indicates that the hydrogen-bond network of water is disrupted in the primary hydration shell (which therefore cannot have an "ice-like" structure). The number of water molecules in the primary hydration shell was determined from the intensity of the approximately 3200-cm-1 band as about 30 water molecules per nucleotide pair. The approximately 3400-cm-1 O-H stretch band was used for determining the total water content, and this band persists at 0% r.h., implying that 5-6 tightly bound water molecules per nucleotide pair remain. The frequency of the approximately 3400-cm-1 O-H stretch mode is lower by 30 to 45 cm-1 in the primary hydration shell compared to free water. The water content as a function of r.h. obtained from these experiments agrees with gravimetric measurements. The disappearance of the approximately 3200-cm-1 band and the shift of the approximately 3400-cm-1 O-H stretch band provide a reliable way of measuring the hydration number of DNA.

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Year:  1989        PMID: 2742983     DOI: 10.1002/bip.360280509

Source DB:  PubMed          Journal:  Biopolymers        ISSN: 0006-3525            Impact factor:   2.505


  11 in total

1.  The influence of packing on free radical yields in solid-state DNA: film compared to lyophilized frozen solution.

Authors:  M T Milano; W A Bernhard
Journal:  Radiat Res       Date:  1999-08       Impact factor: 2.841

2.  Changes of hydration during conformational transitions of DNA.

Authors:  M Harmouchi; G Albiser; S Premilat
Journal:  Eur Biophys J       Date:  1990       Impact factor: 1.733

3.  The effect of packing and conformation on free radical yields in films of variably hydrated DNA.

Authors:  M T Milano; W A Bernhard
Journal:  Radiat Res       Date:  1999-01       Impact factor: 2.841

4.  Direct measurement of the dielectric polarization properties of DNA.

Authors:  Ana Cuervo; Pablo D Dans; José L Carrascosa; Modesto Orozco; Gabriel Gomila; Laura Fumagalli
Journal:  Proc Natl Acad Sci U S A       Date:  2014-08-18       Impact factor: 11.205

5.  Hydration of single-stranded phosphodiester and phosphorothioate oligodeoxyribonucleotides.

Authors:  A P White; K K Reeves; E Snyder; J Farrell; J W Powell; V Mohan; R H Griffey
Journal:  Nucleic Acids Res       Date:  1996-08-15       Impact factor: 16.971

6.  Moving Electrons Purposefully through Single Molecules and Nanostructures: A Tribute to the Science of Professor Nongjian Tao (1963-2020).

Authors:  Erica S Forzani; Huixin He; Joshua Hihath; Stuart Lindsay; Reginald M Penner; Shaopeng Wang; Bingqian Xu
Journal:  ACS Nano       Date:  2020-09-17       Impact factor: 15.881

7.  Hydration of the dTn.dAn x dTn parallel triple helix: a Fourier transform infrared and gravimetric study correlated with molecular dynamics simulations.

Authors:  M Ouali; H Gousset; F Geinguenaud; J Liquier; J Gabarro-Arpa; M Le Bret; E Taillandier
Journal:  Nucleic Acids Res       Date:  1997-12-01       Impact factor: 16.971

8.  Intensities of DNA ion-phosphate modes in the low-frequency Raman spectra.

Authors:  S M Perepelytsya; S N Volkov
Journal:  Eur Phys J E Soft Matter       Date:  2010-02-12       Impact factor: 1.890

9.  Long-range DNA-water interactions.

Authors:  Abhishek K Singh; Chengyuan Wen; Shengfeng Cheng; Nguyen Q Vinh
Journal:  Biophys J       Date:  2021-10-21       Impact factor: 4.033

10.  Yields of damage to C4' deoxyribose and to pyrimidines in pUC18 by the direct effect of ionizing radiation.

Authors:  Anita R Peoples; Jane Lee; Michael Weinfeld; Jamie R Milligan; William A Bernhard
Journal:  Nucleic Acids Res       Date:  2012-03-29       Impact factor: 16.971

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