Literature DB >> 25128388

Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops.

Tatsuya Maehigashi1, Jack A Dunkle1, Stacey J Miles1, Christine M Dunham2.   

Abstract

Maintenance of the correct reading frame on the ribosome is essential for accurate protein synthesis. Here, we report structures of the 70S ribosome bound to frameshift suppressor tRNA(SufA6) and N1-methylguanosine at position 37 (m(1)G37) modification-deficient anticodon stem loop(Pro), both of which cause the ribosome to decode 4 rather than 3 nucleotides, resulting in a +1 reading frame. Our results reveal that decoding at +1 suppressible codons causes suppressor tRNA(SufA6) to undergo a rearrangement of its 5' stem that destabilizes U32, thereby disrupting the conserved U32-A38 base pair. Unexpectedly, the removal of the m(1)G37 modification of tRNA(Pro) also disrupts U32-A38 pairing in a structurally analogous manner. The lack of U32-A38 pairing provides a structural correlation between the transition from canonical translation and a +1 reading of the mRNA. Our structures clarify the molecular mechanism behind suppressor tRNA-induced +1 frameshifting and advance our understanding of the role played by the ribosome in maintaining the correct translational reading frame.

Entities:  

Keywords:  near cognate; processivity

Mesh:

Substances:

Year:  2014        PMID: 25128388      PMCID: PMC4156745          DOI: 10.1073/pnas.1409436111

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  61 in total

1.  Structures of the bacterial ribosome at 3.5 A resolution.

Authors:  Barbara S Schuwirth; Maria A Borovinskaya; Cathy W Hau; Wen Zhang; Antón Vila-Sanjurjo; James M Holton; Jamie H Doudna Cate
Journal:  Science       Date:  2005-11-04       Impact factor: 47.728

Review 2.  tRNA residues that have coevolved with their anticodon to ensure uniform and accurate codon recognition.

Authors:  Mikołaj Olejniczak; Olke C Uhlenbeck
Journal:  Biochimie       Date:  2006-06-23       Impact factor: 4.079

3.  Translocation of a tRNA with an extended anticodon through the ribosome.

Authors:  Steven S Phelps; Cyril Gaudin; Satoko Yoshizawa; Cesar Benitez; Dominique Fourmy; Simpson Joseph
Journal:  J Mol Biol       Date:  2006-05-22       Impact factor: 5.469

Review 4.  tRNA's wobble decoding of the genome: 40 years of modification.

Authors:  Paul F Agris; Franck A P Vendeix; William D Graham
Journal:  J Mol Biol       Date:  2006-11-15       Impact factor: 5.469

5.  The ribosomal grip of the peptidyl-tRNA is critical for reading frame maintenance.

Authors:  S Joakim Näsvall; Kristina Nilsson; Glenn R Björk
Journal:  J Mol Biol       Date:  2008-11-03       Impact factor: 5.469

6.  Codon recognition during frameshift suppression in Saccharomyces cerevisiae.

Authors:  R F Gaber; M R Culbertson
Journal:  Mol Cell Biol       Date:  1984-10       Impact factor: 4.272

7.  Mechanism for expanding the decoding capacity of transfer RNAs by modification of uridines.

Authors:  Albert Weixlbaumer; Frank V Murphy; Agnieszka Dziergowska; Andrzej Malkiewicz; Franck A P Vendeix; Paul F Agris; V Ramakrishnan
Journal:  Nat Struct Mol Biol       Date:  2007-05-13       Impact factor: 15.369

8.  Quality control by the ribosome following peptide bond formation.

Authors:  Hani S Zaher; Rachel Green
Journal:  Nature       Date:  2008-12-17       Impact factor: 49.962

9.  Structures of tRNAs with an expanded anticodon loop in the decoding center of the 30S ribosomal subunit.

Authors:  Christine M Dunham; Maria Selmer; Steven S Phelps; Ann C Kelley; Tsutomu Suzuki; Simpson Joseph; V Ramakrishnan
Journal:  RNA       Date:  2007-04-06       Impact factor: 4.942

10.  Structure of the 70S ribosome complexed with mRNA and tRNA.

Authors:  Maria Selmer; Christine M Dunham; Frank V Murphy; Albert Weixlbaumer; Sabine Petry; Ann C Kelley; John R Weir; V Ramakrishnan
Journal:  Science       Date:  2006-09-07       Impact factor: 47.728

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  34 in total

1.  Importance of a tRNA anticodon loop modification and a conserved, noncanonical anticodon stem pairing in tRNACGGProfor decoding

Authors:  Ha An Nguyen; Eric D Hoffer; Christine M Dunham
Journal:  J Biol Chem       Date:  2019-02-19       Impact factor: 5.157

2.  Disruption of evolutionarily correlated tRNA elements impairs accurate decoding.

Authors:  Ha An Nguyen; S Sunita; Christine M Dunham
Journal:  Proc Natl Acad Sci U S A       Date:  2020-06-29       Impact factor: 11.205

3.  Culmination of a half-century quest reveals insight into mutant tRNA-mediated frameshifting after tRNA departure from the decoding site.

Authors:  John F Atkins
Journal:  Proc Natl Acad Sci U S A       Date:  2018-10-19       Impact factor: 11.205

4.  Mechanism of tRNA-mediated +1 ribosomal frameshifting.

Authors:  Samuel Hong; S Sunita; Tatsuya Maehigashi; Eric D Hoffer; Jack A Dunkle; Christine M Dunham
Journal:  Proc Natl Acad Sci U S A       Date:  2018-09-27       Impact factor: 11.205

Review 5.  Ribosomal frameshifting and transcriptional slippage: From genetic steganography and cryptography to adventitious use.

Authors:  John F Atkins; Gary Loughran; Pramod R Bhatt; Andrew E Firth; Pavel V Baranov
Journal:  Nucleic Acids Res       Date:  2016-07-19       Impact factor: 16.971

Review 6.  The emerging complexity of the tRNA world: mammalian tRNAs beyond protein synthesis.

Authors:  Paul Schimmel
Journal:  Nat Rev Mol Cell Biol       Date:  2017-09-06       Impact factor: 94.444

Review 7.  Mechanisms of mRNA frame maintenance and its subversion during translation of the genetic code.

Authors:  Jack A Dunkle; Christine M Dunham
Journal:  Biochimie       Date:  2015-02-21       Impact factor: 4.079

Review 8.  TrmD: A Methyl Transferase for tRNA Methylation With m1G37.

Authors:  Ya-Ming Hou; Ryuma Matsubara; Ryuichi Takase; Isao Masuda; Joanna I Sulkowska
Journal:  Enzymes       Date:  2017-04-12

9.  mRNA and tRNA modification states influence ribosome speed and frame maintenance during poly(lysine) peptide synthesis.

Authors:  Tyler J Smith; Mehmet Tardu; Hem Raj Khatri; Kristin S Koutmou
Journal:  J Biol Chem       Date:  2022-05-17       Impact factor: 5.486

10.  Maintenance of protein synthesis reading frame by EF-P and m(1)G37-tRNA.

Authors:  Howard B Gamper; Isao Masuda; Milana Frenkel-Morgenstern; Ya-Ming Hou
Journal:  Nat Commun       Date:  2015-05-26       Impact factor: 14.919

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