Literature DB >> 16828219

tRNA residues that have coevolved with their anticodon to ensure uniform and accurate codon recognition.

Mikołaj Olejniczak1, Olke C Uhlenbeck.   

Abstract

The structure, phylogeny and in vivo function of the base pair formed between nucleotides 32 and 38 of the tRNA anticodon loop are reviewed. The A32-U38 pair, which is highly conserved in tRNA2(Ala) and sometimes observed in tRNA2(Pro), was recently found to decrease the affinity of tRNAs to the ribosomal A site relative to other 32-38 combinations. This suggests that the role of 32-38 pair is to tune the tRNA affinity in the A site to a uniform value. New experiments presented here show that the U32C mutation in tRNA1(Gly) increases its affinity to the cognate codon and to codons with third position mismatches in the A site. This suggests that one reason for uniform tRNA binding to evolve was to avoid incorrect codon recognition.

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Year:  2006        PMID: 16828219     DOI: 10.1016/j.biochi.2006.06.005

Source DB:  PubMed          Journal:  Biochimie        ISSN: 0300-9084            Impact factor:   4.079


  38 in total

1.  A domain of the actin binding protein Abp140 is the yeast methyltransferase responsible for 3-methylcytidine modification in the tRNA anti-codon loop.

Authors:  Sonia D'Silva; Steffen J Haider; Eric M Phizicky
Journal:  RNA       Date:  2011-04-25       Impact factor: 4.942

2.  Actin-binding protein ABP140 is a methyltransferase for 3-methylcytidine at position 32 of tRNAs in Saccharomyces cerevisiae.

Authors:  Akiko Noma; Sanghyun Yi; Takayuki Katoh; Yoshimi Takai; Takeo Suzuki; Tsutomu Suzuki
Journal:  RNA       Date:  2011-04-25       Impact factor: 4.942

3.  Nucleotide modifications and tRNA anticodon-mRNA codon interactions on the ribosome.

Authors:  Olof Allnér; Lennart Nilsson
Journal:  RNA       Date:  2011-10-25       Impact factor: 4.942

4.  Codon-Anticodon Recognition in the Bacillus subtilis glyQS T Box Riboswitch: RNA-DEPENDENT CODON SELECTION OUTSIDE THE RIBOSOME.

Authors:  Enrico Caserta; Liang-Chun Liu; Frank J Grundy; Tina M Henkin
Journal:  J Biol Chem       Date:  2015-07-30       Impact factor: 5.157

Review 5.  A gripping tale of ribosomal frameshifting: extragenic suppressors of frameshift mutations spotlight P-site realignment.

Authors:  John F Atkins; Glenn R Björk
Journal:  Microbiol Mol Biol Rev       Date:  2009-03       Impact factor: 11.056

6.  A tipping point for mistranslation and disease.

Authors:  Paul Schimmel; Min Guo
Journal:  Nat Struct Mol Biol       Date:  2009-04       Impact factor: 15.369

7.  Bases in the anticodon loop of tRNA(Ala)(GGC) prevent misreading.

Authors:  Hiroshi Murakami; Atsushi Ohta; Hiroaki Suga
Journal:  Nat Struct Mol Biol       Date:  2009-03-22       Impact factor: 15.369

8.  Bringing order to translation: the contributions of transfer RNA anticodon-domain modifications.

Authors:  Paul F Agris
Journal:  EMBO Rep       Date:  2008-06-13       Impact factor: 8.807

9.  Analysis of genomic tRNA sets from Bacteria, Archaea, and Eukarya points to anticodon-codon hydrogen bonds as a major determinant of tRNA compositional variations.

Authors:  Ilia Targanski; Vera Cherkasova
Journal:  RNA       Date:  2008-04-25       Impact factor: 4.942

10.  A sequence element that tunes Escherichia coli tRNA(Ala)(GGC) to ensure accurate decoding.

Authors:  Sarah Ledoux; Mikołaj Olejniczak; Olke C Uhlenbeck
Journal:  Nat Struct Mol Biol       Date:  2009-03-22       Impact factor: 15.369

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