Literature DB >> 25126960

The structure of mouse cytomegalovirus m04 protein obtained from sparse NMR data reveals a conserved fold of the m02-m06 viral immune modulator family.

Nikolaos G Sgourakis1, Kannan Natarajan2, Jinfa Ying1, Beat Vogeli1, Lisa F Boyd2, David H Margulies3, Ad Bax4.   

Abstract

Immunoevasins are key proteins used by viruses to subvert host immune responses. Determining their high-resolution structures is key to understanding virus-host interactions toward the design of vaccines and other antiviral therapies. Mouse cytomegalovirus encodes a unique set of immunoevasins, the m02-m06 family, that modulates major histocompatibility complex class I (MHC-I) antigen presentation to CD8+ T cells and natural killer cells. Notwithstanding the large number of genetic and functional studies, the structural biology of immunoevasins remains incompletely understood, largely because of crystallization bottlenecks. Here we implement a technology using sparse nuclear magnetic resonance data and integrative Rosetta modeling to determine the structure of the m04/gp34 immunoevasin extracellular domain. The structure reveals a β fold that is representative of the m02-m06 family of viral proteins, several of which are known to bind MHC-I molecules and interfere with antigen presentation, suggesting its role as a diversified immune regulation module.
Copyright © 2014 Elsevier Ltd. All rights reserved.

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Year:  2014        PMID: 25126960      PMCID: PMC4156524          DOI: 10.1016/j.str.2014.05.018

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  64 in total

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Journal:  Protein Eng       Date:  1999-07

2.  A cytomegalovirus glycoprotein re-routes MHC class I complexes to lysosomes for degradation.

Authors:  U Reusch; W Muranyi; P Lucin; H G Burgert; H Hengel; U H Koszinowski
Journal:  EMBO J       Date:  1999-02-15       Impact factor: 11.598

Review 3.  Viral modulation of antigen presentation: manipulation of cellular targets in the ER and beyond.

Authors:  Brendan N Lilley; Hidde L Ploegh
Journal:  Immunol Rev       Date:  2005-10       Impact factor: 12.988

Review 4.  Weak alignment NMR: a hawk-eyed view of biomolecular structure.

Authors:  Ad Bax; Alexander Grishaev
Journal:  Curr Opin Struct Biol       Date:  2005-10       Impact factor: 6.809

5.  A mouse cytomegalovirus glycoprotein, gp34, forms a complex with folded class I MHC molecules in the ER which is not retained but is transported to the cell surface.

Authors:  M F Kleijnen; J B Huppa; P Lucin; S Mukherjee; H Farrell; A E Campbell; U H Koszinowski; A B Hill; H L Ploegh
Journal:  EMBO J       Date:  1997-02-17       Impact factor: 11.598

6.  The crystal structure of H-2Dd MHC class I complexed with the HIV-1-derived peptide P18-I10 at 2.4 A resolution: implications for T cell and NK cell recognition.

Authors:  A Achour; K Persson; R A Harris; J Sundbäck; C L Sentman; Y Lindqvist; G Schneider; K Kärre
Journal:  Immunity       Date:  1998-08       Impact factor: 31.745

7.  Members of the immunoglobulin superfamily in bacteria.

Authors:  A Bateman; S R Eddy; C Chothia
Journal:  Protein Sci       Date:  1996-09       Impact factor: 6.725

8.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

9.  Attenuated T2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution.

Authors:  K Pervushin; R Riek; G Wider; K Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  1997-11-11       Impact factor: 11.205

10.  Three-dimensional structure of H-2Dd complexed with an immunodominant peptide from human immunodeficiency virus envelope glycoprotein 120.

Authors:  H Li; K Natarajan; E L Malchiodi; D H Margulies; R A Mariuzza
Journal:  J Mol Biol       Date:  1998       Impact factor: 5.469

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  13 in total

1.  A Novel MHC-I Surface Targeted for Binding by the MCMV m06 Immunoevasin Revealed by Solution NMR.

Authors:  Nikolaos G Sgourakis; Nathan A May; Lisa F Boyd; Jinfa Ying; Ad Bax; David H Margulies
Journal:  J Biol Chem       Date:  2015-10-13       Impact factor: 5.157

2.  Unraveling the structure and dynamics of the human DNAJB6b chaperone by NMR reveals insights into Hsp40-mediated proteostasis.

Authors:  Theodoros K Karamanos; Vitali Tugarinov; G Marius Clore
Journal:  Proc Natl Acad Sci U S A       Date:  2019-10-07       Impact factor: 11.205

3.  Less is more: structures of difficult targets with minimal constraints.

Authors:  Neil R Lloyd; Deborah S Wuttke
Journal:  Structure       Date:  2014-09-02       Impact factor: 5.006

Review 4.  Chemical shift-based methods in NMR structure determination.

Authors:  Santrupti Nerli; Andrew C McShan; Nikolaos G Sgourakis
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2018-03-11       Impact factor: 9.795

5.  NMR structure determination of the protein NP_344798.1 as the first representative of Pfam PF06042.

Authors:  Biswaranjan Mohanty; Pedro Serrano; Michael Geralt; Kurt Wüthrich
Journal:  J Biomol NMR       Date:  2014-11-28       Impact factor: 2.835

6.  A hybrid NMR/SAXS-based approach for discriminating oligomeric protein interfaces using Rosetta.

Authors:  Paolo Rossi; Lei Shi; Gaohua Liu; Christopher M Barbieri; Hsiau-Wei Lee; Thomas D Grant; Joseph R Luft; Rong Xiao; Thomas B Acton; Edward H Snell; Gaetano T Montelione; David Baker; Oliver F Lange; Nikolaos G Sgourakis
Journal:  Proteins       Date:  2014-12-19

7.  Critical assessment of methods of protein structure prediction: Progress and new directions in round XI.

Authors:  John Moult; Krzysztof Fidelis; Andriy Kryshtafovych; Torsten Schwede; Anna Tramontano
Journal:  Proteins       Date:  2016-06-01

8.  J-UNIO protocol used for NMR structure determination of the 206-residue protein NP_346487.1 from Streptococcus pneumoniae TIGR4.

Authors:  Kristaps Jaudzems; Bill Pedrini; Michael Geralt; Pedro Serrano; Kurt Wüthrich
Journal:  J Biomol NMR       Date:  2014-11-27       Impact factor: 2.835

9.  Sparse multidimensional iterative lineshape-enhanced (SMILE) reconstruction of both non-uniformly sampled and conventional NMR data.

Authors:  Jinfa Ying; Frank Delaglio; Dennis A Torchia; Ad Bax
Journal:  J Biomol NMR       Date:  2016-11-19       Impact factor: 2.835

10.  Determining methyl sidechain conformations in a CS-ROSETTA model using methyl 1H-13C residual dipolar couplings.

Authors:  Theodoros K Karamanos; Vitali Tugarinov; G Marius Clore
Journal:  J Biomol NMR       Date:  2020-01-16       Impact factor: 2.835

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