Literature DB >> 25185825

Less is more: structures of difficult targets with minimal constraints.

Neil R Lloyd1, Deborah S Wuttke2.   

Abstract

By merging recent experimental and computational methodology advances, resolution-adapted structural recombination Rosetta has emerged as a powerful strategy for solving the structure of traditionally challenging targets. In this issue of Structure, Sgourakis and colleagues solve the structure of one such target, the immunoevasin protein m04, using this approach.
Copyright © 2014 Elsevier Ltd. All rights reserved.

Entities:  

Mesh：

Substances：

Year:  2014        PMID： 25185825      PMCID： PMC4260533          DOI： 10.1016/j.str.2014.08.004

Source DB:  PubMed          Journal:  Structure        ISSN： 0969-2126            Impact factor:   5.006


  10 in total

1.  Determination of solution structures of proteins up to 40 kDa using CS-Rosetta with sparse NMR data from deuterated samples.

Authors:  Oliver F Lange; Paolo Rossi; Nikolaos G Sgourakis; Yifan Song; Hsiau-Wei Lee; James M Aramini; Asli Ertekin; Rong Xiao; Thomas B Acton; Gaetano T Montelione; David Baker
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-25       Impact factor: 11.205

2.  A large scale test of computational protein design: folding and stability of nine completely redesigned globular proteins.

Authors:  Gautam Dantas; Brian Kuhlman; David Callender; Michelle Wong; David Baker
Journal:  J Mol Biol       Date:  2003-09-12       Impact factor: 5.469

3.  The structure of mouse cytomegalovirus m04 protein obtained from sparse NMR data reveals a conserved fold of the m02-m06 viral immune modulator family.

Authors:  Nikolaos G Sgourakis; Kannan Natarajan; Jinfa Ying; Beat Vogeli; Lisa F Boyd; David H Margulies; Ad Bax
Journal:  Structure       Date:  2014-08-07       Impact factor: 5.006

4.  I-TASSER: a unified platform for automated protein structure and function prediction.

Authors:  Ambrish Roy; Alper Kucukural; Yang Zhang
Journal:  Nat Protoc       Date:  2010-03-25       Impact factor: 13.491

5.  Isotope labeling strategies for the study of high-molecular-weight proteins by solution NMR spectroscopy.

Authors:  Vitali Tugarinov; Voula Kanelis; Lewis E Kay
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

6.  CASP10 results compared to those of previous CASP experiments.

Authors:  Andriy Kryshtafovych; Krzysztof Fidelis; John Moult
Journal:  Proteins       Date:  2013-12-17

7.  NMR structure determination for larger proteins using backbone-only data.

Authors:  Srivatsan Raman; Oliver F Lange; Paolo Rossi; Michael Tyka; Xu Wang; James Aramini; Gaohua Liu; Theresa A Ramelot; Alexander Eletsky; Thomas Szyperski; Michael A Kennedy; James Prestegard; Gaetano T Montelione; David Baker
Journal:  Science       Date:  2010-02-04       Impact factor: 47.728

8.  Structure of the BamC two-domain protein obtained by Rosetta with a limited NMR data set.

Authors:  Lisa R Warner; Krisztina Varga; Oliver F Lange; Susan L Baker; David Baker; Marcelo C Sousa; Arthur Pardi
Journal:  J Mol Biol       Date:  2011-05-23       Impact factor: 5.469

9.  Resolution-adapted recombination of structural features significantly improves sampling in restraint-guided structure calculation.

Authors:  Oliver F Lange; David Baker
Journal:  Proteins       Date:  2012-03

10.  Structure of Est3 reveals a bimodal surface with differential roles in telomere replication.

Authors:  Timsi Rao; Johnathan W Lubin; Geoffrey S Armstrong; Timothy M Tucey; Victoria Lundblad; Deborah S Wuttke
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-16       Impact factor: 12.779
  10 in total
  3 in total

1.  NMR structure determination of the protein NP_344798.1 as the first representative of Pfam PF06042.

Authors:  Biswaranjan Mohanty; Pedro Serrano; Michael Geralt; Kurt Wüthrich
Journal:  J Biomol NMR       Date:  2014-11-28       Impact factor: 2.835

2.  A hybrid NMR/SAXS-based approach for discriminating oligomeric protein interfaces using Rosetta.

Authors:  Paolo Rossi; Lei Shi; Gaohua Liu; Christopher M Barbieri; Hsiau-Wei Lee; Thomas D Grant; Joseph R Luft; Rong Xiao; Thomas B Acton; Edward H Snell; Gaetano T Montelione; David Baker; Oliver F Lange; Nikolaos G Sgourakis
Journal:  Proteins       Date:  2014-12-19

3.  J-UNIO protocol used for NMR structure determination of the 206-residue protein NP_346487.1 from Streptococcus pneumoniae TIGR4.

Authors:  Kristaps Jaudzems; Bill Pedrini; Michael Geralt; Pedro Serrano; Kurt Wüthrich
Journal:  J Biomol NMR       Date:  2014-11-27       Impact factor: 2.835
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.