Literature DB >> 2510165

Concordant evolution of coding and noncoding regions of DNA made possible by the universal rule of TA/CG deficiency-TG/CT excess.

T Yomo1, S Ohno.   

Abstract

The universal rule of TA/CG deficiency-TG/CT excess previously proposed as the construction principle of coding sequences applies to noncoding regions of the gene as well. Analysis of a 1989-base-long gene sequence for mouse immunoglobulin gamma 2a heavy-chain constant region as well as the 19,002-base-long gene sequence for human serum albumin revealed deficiency and overabundance of very similar sets of base trimers and tetramers in the coding and noncoding regions of the same gene, in spite of the fact that noncoding regions were considerably richer in A + T. Inasmuch as this universal rule does not discriminate one strand of DNA double helix from another, two complementary DNA strands of the entire gene maintained nearly perfect symmetry. That is to say, the degrees of excesses, deficiencies of the 64-base trimers remained nearly identical between two complementary strands, and this symmetry was only slightly disturbed in the coding region. It would thus appear that the universal rule as an intrinsic force has been exerting far greater influence than natural selection in the evolution of genes.

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Year:  1989        PMID: 2510165      PMCID: PMC298300          DOI: 10.1073/pnas.86.21.8452

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  4 in total

1.  The complete nucleotide sequence of mouse immunoglobin gamma 2a gene and evolution of heavy chain genes: further evidence for intervening sequence-mediated domain transfer.

Authors:  Y Yamawaki-Kataoka; T Miyata; T Honjo
Journal:  Nucleic Acids Res       Date:  1981-03-25       Impact factor: 16.971

2.  Molecular structure of the human albumin gene is revealed by nucleotide sequence within q11-22 of chromosome 4.

Authors:  P P Minghetti; D E Ruffner; W J Kuang; O E Dennison; J W Hawkins; W G Beattie; A Dugaiczyk
Journal:  J Biol Chem       Date:  1986-05-25       Impact factor: 5.157

3.  Mono- through hexanucleotide composition of the Escherichia coli genome: a Markov chain analysis.

Authors:  G J Phillips; J Arnold; R Ivarie
Journal:  Nucleic Acids Res       Date:  1987-03-25       Impact factor: 16.971

4.  Universal rule for coding sequence construction: TA/CG deficiency-TG/CT excess.

Authors:  S Ohno
Journal:  Proc Natl Acad Sci U S A       Date:  1988-12       Impact factor: 11.205

  4 in total
  19 in total

Review 1.  Directional mutation pressure, selective constraints, and genetic equilibria.

Authors:  N Sueoka
Journal:  J Mol Evol       Date:  1992-02       Impact factor: 2.395

2.  No stop codons in the antisense strands of the genes for nylon oligomer degradation.

Authors:  T Yomo; I Urabe; H Okada
Journal:  Proc Natl Acad Sci U S A       Date:  1992-05-01       Impact factor: 11.205

3.  Many peptide fragments of alien antigens are homologous with host proteins, thus canalizing T-cell responses.

Authors:  S Ohno
Journal:  Proc Natl Acad Sci U S A       Date:  1991-04-15       Impact factor: 11.205

4.  Counterselection of GATC sequences in enterobacteriophages by the components of the methyl-directed mismatch repair system.

Authors:  P Deschavanne; M Radman
Journal:  J Mol Evol       Date:  1991-08       Impact factor: 2.395

5.  On primordial sense-antisense coding.

Authors:  Andrei S Rodin; Sergei N Rodin; Charles W Carter
Journal:  J Mol Evol       Date:  2009-12-03       Impact factor: 2.395

6.  On concerted origin of transfer RNAs with complementary anticodons.

Authors:  S Rodin; S Ohno; A Rodin
Journal:  Orig Life Evol Biosph       Date:  1993-12       Impact factor: 1.950

7.  Various regulatory sequences are deprived of their uniqueness by the universal rule of TA/CG deficiency and TG/CT excess.

Authors:  S Ohno; T Yomo
Journal:  Proc Natl Acad Sci U S A       Date:  1990-02       Impact factor: 11.205

8.  Sense in antisense?

Authors:  D R Forsdyke
Journal:  J Mol Evol       Date:  1995-11       Impact factor: 2.395

9.  Mo-MuLV nucleotide sequence exhibits three levels of oligomeric repetitions, suggesting a stepwise molecular evolution.

Authors:  I Laprevotte
Journal:  J Mol Evol       Date:  1992-11       Impact factor: 2.395

10.  Virus-host coevolution: common patterns of nucleotide motif usage in Flaviviridae and their hosts.

Authors:  Francisco P Lobo; Bruno E F Mota; Sérgio D J Pena; Vasco Azevedo; Andréa M Macedo; Andreas Tauch; Carlos R Machado; Glória R Franco
Journal:  PLoS One       Date:  2009-07-20       Impact factor: 3.240

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