Literature DB >> 2137247

Various regulatory sequences are deprived of their uniqueness by the universal rule of TA/CG deficiency and TG/CT excess.

S Ohno1, T Yomo.   

Abstract

The universal rule of TA/CG deficiency-TG/CT excess endures the extremely high mutation rate of a retrovirus (human immunodeficiency virus type 1) as well as methylation of CAG rather than CG in a plant (maize). Among the consistently abundant nucleotide oligomers, there are two complementary pairs of palindromic nucleotide pentamers containing TG and CA. Out of the CAGTG and CACTG pair emerged the heptameric pair for the long-distance recombination of immunoglobulin genes, CACAGTG and CACTGTG. Reflecting their origin, these heptamers are found everywhere in all DNA, and a substantial fraction of them are accompanied by nonameric components properly spaced from them. It appears that, were the recombination event not confined to B cells, results of illegitimate recombinations might be disastrous. The other pentameric pair is TGCAT and ATGCA. Out of this pair emerged the complementary pair of transcription enhancer decamers: TNATTTGCAT for immunoglobulin light chains and ATGCAAATNA for immunoglobulin heavy chains. Again reflecting their origin, these decamers are found everywhere in all DNA and some genes--for example, in the 3' flanking region of immunoglobulin heavy chain constant region--are accompanied by a downstream "TATA box." It seems that even with regard to the productively recombined immunoglobulin genes, misinitiation of enhanced transcription is a real possibility.

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Year:  1990        PMID: 2137247      PMCID: PMC53442          DOI: 10.1073/pnas.87.3.1218

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  14 in total

1.  Sequences at the somatic recombination sites of immunoglobulin light-chain genes.

Authors:  H Sakano; K Hüppi; G Heinrich; S Tonegawa
Journal:  Nature       Date:  1979-07-26       Impact factor: 49.962

2.  Transcription of novel open reading frames of AIDS retrovirus during infection of lymphocytes.

Authors:  A B Rabson; D F Daugherty; S Venkatesan; K E Boulukos; S I Benn; T M Folks; P Feorino; M A Martin
Journal:  Science       Date:  1985-09-27       Impact factor: 47.728

3.  Nucleotide sequence of Suncus murinus immunoglobulin mu gene and comparison with mouse and human mu genes.

Authors:  H Ishiguro; Y Ichihara; T Namikawa; T Nagatsu; Y Kurosawa
Journal:  FEBS Lett       Date:  1989-04-24       Impact factor: 4.124

4.  Sequences closely related to an immunoglobulin gene promoter/enhancer element occur also upstream of other eukaryotic and of prokaryotic genes.

Authors:  F G Falkner; R Mocikat; H G Zachau
Journal:  Nucleic Acids Res       Date:  1986-11-25       Impact factor: 16.971

Review 5.  Somatic generation of antibody diversity.

Authors:  S Tonegawa
Journal:  Nature       Date:  1983-04-14       Impact factor: 49.962

6.  Diversity of germ-line immunoglobulin VH genes.

Authors:  D Givol; R Zakut; K Effron; G Rechavi; D Ram; J B Cohen
Journal:  Nature       Date:  1981-07-30       Impact factor: 49.962

7.  Structure of the 5' ends of immunoglobulin genes: a novel conserved sequence.

Authors:  T G Parslow; D L Blair; W J Murphy; D K Granner
Journal:  Proc Natl Acad Sci U S A       Date:  1984-05       Impact factor: 11.205

8.  Rates of evolution of the retroviral oncogene of Moloney murine sarcoma virus and of its cellular homologues.

Authors:  T Gojobori; S Yokoyama
Journal:  Proc Natl Acad Sci U S A       Date:  1985-06       Impact factor: 11.205

9.  Universal rule for coding sequence construction: TA/CG deficiency-TG/CT excess.

Authors:  S Ohno
Journal:  Proc Natl Acad Sci U S A       Date:  1988-12       Impact factor: 11.205

10.  Structure of the sucrose synthase gene on chromosome 9 of Zea mays L.

Authors:  W Werr; W B Frommer; C Maas; P Starlinger
Journal:  EMBO J       Date:  1985-06       Impact factor: 11.598

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  11 in total

1.  On concerted origin of transfer RNAs with complementary anticodons.

Authors:  S Rodin; S Ohno; A Rodin
Journal:  Orig Life Evol Biosph       Date:  1993-12       Impact factor: 1.950

2.  Evolutionary mechanisms and population dynamics of the third variable envelope region of HIV within single hosts.

Authors:  Y Yamaguchi; T Gojobori
Journal:  Proc Natl Acad Sci U S A       Date:  1997-02-18       Impact factor: 11.205

3.  Transfer RNAs with complementary anticodons: could they reflect early evolution of discriminative genetic code adaptors?

Authors:  S Rodin; S Ohno; A Rodin
Journal:  Proc Natl Acad Sci U S A       Date:  1993-05-15       Impact factor: 11.205

4.  Nucleotide composition as a driving force in the evolution of retroviruses.

Authors:  E C Bronson; J N Anderson
Journal:  J Mol Evol       Date:  1994-05       Impact factor: 2.395

5.  Selection against CpG dinucleotides in lentiviral genes: a possible role of methylation in regulation of viral expression.

Authors:  E G Shpaer; J I Mullins
Journal:  Nucleic Acids Res       Date:  1990-10-11       Impact factor: 16.971

6.  The unusual nucleotide content of the HIV RNA genome results in a biased amino acid composition of HIV proteins.

Authors:  B Berkhout; F J van Hemert
Journal:  Nucleic Acids Res       Date:  1994-05-11       Impact factor: 16.971

7.  Importance of purine and pyrimidine content of local nucleotide sequences (six bases long) for evolution of the human immunodeficiency virus type 1.

Authors:  H Doi
Journal:  Proc Natl Acad Sci U S A       Date:  1991-10-15       Impact factor: 11.205

8.  Mo-MuLV nucleotide sequence exhibits three levels of oligomeric repetitions, suggesting a stepwise molecular evolution.

Authors:  I Laprevotte
Journal:  J Mol Evol       Date:  1992-11       Impact factor: 2.395

9.  Increasing the CpG dinucleotide abundance in the HIV-1 genomic RNA inhibits viral replication.

Authors:  Irati Antzin-Anduetza; Charlotte Mahiet; Luke A Granger; Charlotte Odendall; Chad M Swanson
Journal:  Retrovirology       Date:  2017-11-09       Impact factor: 4.602

10.  CpG Dinucleotides Inhibit HIV-1 Replication through Zinc Finger Antiviral Protein (ZAP)-Dependent and -Independent Mechanisms.

Authors:  Mattia Ficarelli; Irati Antzin-Anduetza; Rupert Hugh-White; Andrew E Firth; Helin Sertkaya; Harry Wilson; Stuart J D Neil; Reiner Schulz; Chad M Swanson
Journal:  J Virol       Date:  2020-02-28       Impact factor: 5.103

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