Literature DB >> 7490772

Sense in antisense?

D R Forsdyke1.   

Abstract

A correspondence between open reading frames in sense and antisense strands is expected from the hypothesis that the prototypic triplet code was of general form RNY, where R is a purine base, N is any base, and Y is a pyrimidine. A deficit of stop codons in the antisense strand (and thus long open reading frames) is predicted for organisms with high G + C percentages; however, two bacteria (Azotobacter vinelandii, Rhodobacter capsulatum) have larger average antisense strand open reading frames than predicted from (G + C)%. The similar codon frequencies found in sense and antisense strands can be attributed to the wide distribution of inverted repeats (stem-loop potential) in natural DNA sequences.

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Year:  1995        PMID: 7490772     DOI: 10.1007/bf00175816

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  31 in total

Review 1.  Complementarity of peptides specified by 'sense' and 'antisense' strands of DNA.

Authors:  J E Blalock
Journal:  Trends Biotechnol       Date:  1990-06       Impact factor: 19.536

Review 2.  The grammatical rule for all DNA: junk and coding sequences.

Authors:  S Ohno; T Yomo
Journal:  Electrophoresis       Date:  1991 Feb-Mar       Impact factor: 3.535

3.  Codon usage tabulated from the GenBank genetic sequence data.

Authors:  K Wada; S Aota; R Tsuchiya; F Ishibashi; T Gojobori; T Ikemura
Journal:  Nucleic Acids Res       Date:  1990-04-25       Impact factor: 16.971

4.  Antisense overlapping open reading frames in genes from bacteria to humans.

Authors:  E Merino; P Balbás; J L Puente; F Bolívar
Journal:  Nucleic Acids Res       Date:  1994-05-25       Impact factor: 16.971

5.  An anti-prion protein?

Authors:  M Moser; B Oesch; H Büeler
Journal:  Nature       Date:  1993-03-18       Impact factor: 49.962

6.  From primeval message to present-day gene.

Authors:  J C Shepherd
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1983

7.  Comparative analysis of specificity in protein-protein interactions. Part III.: Models of the gene expression based on the sequential complementary coding of some pituitary proteins.

Authors:  J Bíró
Journal:  Med Hypotheses       Date:  1981-08       Impact factor: 1.538

8.  Doublet frequencies in evolutionary distinct groups.

Authors:  R Nussinov
Journal:  Nucleic Acids Res       Date:  1984-02-10       Impact factor: 16.971

9.  Is there a relationship between DNA sequences encoding peptide ligands and their receptors?

Authors:  A Goldstein; D L Brutlag
Journal:  Proc Natl Acad Sci U S A       Date:  1989-01       Impact factor: 11.205

10.  Codon usage in Homo sapiens: evidence for a coding pattern on the non-coding strand and evolutionary implications of dinucleotide discrimination.

Authors:  C Alff-Steinberger
Journal:  J Theor Biol       Date:  1987-01-07       Impact factor: 2.691

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  2 in total

1.  The Proteomic Code: a molecular recognition code for proteins.

Authors:  Jan C Biro
Journal:  Theor Biol Med Model       Date:  2007-11-13       Impact factor: 2.432

2.  Induction of human immunodeficiency virus (HIV-1) envelope specific cell-mediated immunity by a non-homologous synthetic peptide.

Authors:  Ammar Achour; Jean-Michel Biquard; Velibor Krsmanovic; Jean-Pierre M'bika; Damien Ficheux; Marianna Sikorska; Alain J Cozzone
Journal:  PLoS One       Date:  2007-11-28       Impact factor: 3.240

  2 in total

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