Literature DB >> 25060705

Histone methylation and V(D)J recombination.

Noriko Shimazaki1, Michael R Lieber.   

Abstract

V(D)J recombination is the process by which the diversity of antigen receptor genes is generated and is also indispensable for lymphocyte development. This recombination event occurs in a cell lineage- and stage-specific manner, and is carefully controlled by chromatin structure and ordered histone modifications. The recombinationally active V(D)J loci are associated with hypermethylation at lysine4 of histone H3 and hyperacetylation of histones H3/H4. The recombination activating gene 1 (RAG1) and RAG2 complex initiates recombination by introducing double-strand DNA breaks at recombination signal sequences (RSS) adjacent to each coding sequence. To be recognized by the RAG complex, RSS sites must be within an open chromatin context. In addition, the RAG complex specifically recognizes hypermethylated H3K4 through its plant homeodomain (PHD) finger in the RAG2 C terminus, which stimulates RAG catalytic activity via that interaction. In this review, we describe how histone methylation controls V(D)J recombination and discuss its potential role in lymphoid malignancy by mistargeting the RAG complex.

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Year:  2014        PMID: 25060705     DOI: 10.1007/s12185-014-1637-4

Source DB:  PubMed          Journal:  Int J Hematol        ISSN: 0925-5710            Impact factor:   2.490


  62 in total

Review 1.  The bounty of RAGs: recombination signal complexes and reaction outcomes.

Authors:  Patrick C Swanson
Journal:  Immunol Rev       Date:  2004-08       Impact factor: 12.988

2.  Histone H3R2 symmetric dimethylation and histone H3K4 trimethylation are tightly correlated in eukaryotic genomes.

Authors:  Chih-Chi Yuan; Adam G W Matthews; Yi Jin; Chang Feng Chen; Brad A Chapman; Toshiro K Ohsumi; Karen C Glass; Tatiana G Kutateladze; Mark L Borowsky; Kevin Struhl; Marjorie A Oettinger
Journal:  Cell Rep       Date:  2012-02-23       Impact factor: 9.423

Review 3.  The involvement of non-B DNA structures in gross chromosomal rearrangements.

Authors:  Albino Bacolla; Marzena Wojciechowska; Beata Kosmider; Jacquelynn E Larson; Robert D Wells
Journal:  DNA Repair (Amst)       Date:  2006-06-27

4.  A PHD finger motif in the C terminus of RAG2 modulates recombination activity.

Authors:  Sheryl K Elkin; Dmitri Ivanov; Mark Ewalt; Colin G Ferguson; Sven G Hyberts; Zhen-Yu J Sun; Glenn D Prestwich; Junying Yuan; Gerhard Wagner; Marjorie A Oettinger; Or P Gozani
Journal:  J Biol Chem       Date:  2005-06-17       Impact factor: 5.157

5.  Accessibility of nucleosomal DNA to V(D)J cleavage is modulated by RSS positioning and HMG1.

Authors:  J Kwon; A N Imbalzano; A Matthews; M A Oettinger
Journal:  Mol Cell       Date:  1998-12       Impact factor: 17.970

Review 6.  V(D)J recombination: mechanisms of initiation.

Authors:  David G Schatz; Patrick C Swanson
Journal:  Annu Rev Genet       Date:  2011-08-19       Impact factor: 16.830

7.  RAG-mediated recombination is the predominant driver of oncogenic rearrangement in ETV6-RUNX1 acute lymphoblastic leukemia.

Authors:  Elli Papaemmanuil; Inmaculada Rapado; Yilong Li; Nicola E Potter; David C Wedge; Jose Tubio; Ludmil B Alexandrov; Peter Van Loo; Susanna L Cooke; John Marshall; Inigo Martincorena; Jonathan Hinton; Gunes Gundem; Frederik W van Delft; Serena Nik-Zainal; David R Jones; Manasa Ramakrishna; Ian Titley; Lucy Stebbings; Catherine Leroy; Andrew Menzies; John Gamble; Ben Robinson; Laura Mudie; Keiran Raine; Sarah O'Meara; Jon W Teague; Adam P Butler; Giovanni Cazzaniga; Andrea Biondi; Jan Zuna; Helena Kempski; Markus Muschen; Anthony M Ford; Michael R Stratton; Mel Greaves; Peter J Campbell
Journal:  Nat Genet       Date:  2014-01-12       Impact factor: 38.330

Review 8.  The mechanism of double-strand DNA break repair by the nonhomologous DNA end-joining pathway.

Authors:  Michael R Lieber
Journal:  Annu Rev Biochem       Date:  2010       Impact factor: 23.643

Review 9.  Recombination centres and the orchestration of V(D)J recombination.

Authors:  David G Schatz; Yanhong Ji
Journal:  Nat Rev Immunol       Date:  2011-03-11       Impact factor: 53.106

10.  CpG methylated minichromosomes become inaccessible for V(D)J recombination after undergoing replication.

Authors:  C L Hsieh; M R Lieber
Journal:  EMBO J       Date:  1992-01       Impact factor: 11.598

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  10 in total

1.  Guest editorial: molecular mechanisms of lymphocyte development: recent findings.

Authors:  Takafumi Yokota
Journal:  Int J Hematol       Date:  2014-08-05       Impact factor: 2.490

2.  MLL1 Promotes IL-7 Responsiveness and Survival during B Cell Differentiation.

Authors:  Tao Gan; Bin E Li; Bibhu P Mishra; Kenneth L Jones; Patricia Ernst
Journal:  J Immunol       Date:  2018-01-19       Impact factor: 5.422

3.  Native internally calibrated chromatin immunoprecipitation for quantitative studies of histone post-translational modifications.

Authors:  Adrian T Grzybowski; Rohan N Shah; William F Richter; Alexander J Ruthenburg
Journal:  Nat Protoc       Date:  2019-11-13       Impact factor: 13.491

4.  PEG3 control on the mammalian MSL complex.

Authors:  An Ye; Hana Kim; Joomyeong Kim
Journal:  PLoS One       Date:  2017-06-13       Impact factor: 3.240

5.  RAG Recombinase as a Selective Pressure for Genome Evolution.

Authors:  D Passagem-Santos; M Bonnet; D Sobral; I Trancoso; J G Silva; V M Barreto; A Athanasiadis; J Demengeot; J B Pereira-Leal
Journal:  Genome Biol Evol       Date:  2016-12-14       Impact factor: 3.416

Review 6.  The Role of Histone Protein Modifications and Mutations in Histone Modifiers in Pediatric B-Cell Progenitor Acute Lymphoblastic Leukemia.

Authors:  Szymon Janczar; Karolina Janczar; Agata Pastorczak; Hani Harb; Adam J W Paige; Beata Zalewska-Szewczyk; Marian Danilewicz; Wojciech Mlynarski
Journal:  Cancers (Basel)       Date:  2017-01-03       Impact factor: 6.639

7.  The histone methyltransferase Setd2 is indispensable for V(D)J recombination.

Authors:  Zhongzhong Ji; Yaru Sheng; Juju Miao; Xiaoxia Li; Huifang Zhao; Jinming Wang; Chaping Cheng; Xue Wang; Kaiyuan Liu; Kai Zhang; Longmei Xu; Jufang Yao; Lijing Shen; Jian Hou; Wenhao Zhou; Jinqiao Sun; Li Li; Wei-Qiang Gao; Helen He Zhu
Journal:  Nat Commun       Date:  2019-07-26       Impact factor: 14.919

8.  Loss of H3K36 Methyltransferase SETD2 Impairs V(D)J Recombination during Lymphoid Development.

Authors:  S Haihua Chu; Jonathan R Chabon; Chloe N Matovina; Janna C Minehart; Bo-Ruei Chen; Jian Zhang; Vipul Kumar; Yijun Xiong; Elsa Callen; Putzer J Hung; Zhaohui Feng; Richard P Koche; X Shirley Liu; Jayanta Chaudhuri; Andre Nussenzweig; Barry P Sleckman; Scott A Armstrong
Journal:  iScience       Date:  2020-02-27

9.  Meta-Analysis of DNA Tumor-Viral Integration Site Selection Indicates a Role for Repeats, Gene Expression and Epigenetics.

Authors:  Janet M Doolittle-Hall; Danielle L Cunningham Glasspoole; William T Seaman; Jennifer Webster-Cyriaque
Journal:  Cancers (Basel)       Date:  2015-11-10       Impact factor: 6.639

Review 10.  Genetic abnormalities associated with acute lymphoblastic leukemia.

Authors:  Takafumi Yokota; Yuzuru Kanakura
Journal:  Cancer Sci       Date:  2016-04-27       Impact factor: 6.716

  10 in total

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