Literature DB >> 21394103

Recombination centres and the orchestration of V(D)J recombination.

David G Schatz1, Yanhong Ji.   

Abstract

The initiation of V(D)J recombination by the recombination activating gene 1 (RAG1) and RAG2 proteins is carefully orchestrated to ensure that antigen receptor gene assembly occurs in the appropriate cell lineage and in the proper developmental order. Here we review recent advances in our understanding of how DNA binding and cleavage by the RAG proteins are regulated by the chromatin structure and architecture of antigen receptor genes. These advances suggest novel mechanisms for both the targeting and the mistargeting of V(D)J recombination, and have implications for how these events contribute to genome instability and lymphoid malignancy.

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Year:  2011        PMID: 21394103     DOI: 10.1038/nri2941

Source DB:  PubMed          Journal:  Nat Rev Immunol        ISSN: 1474-1733            Impact factor:   53.106


  118 in total

1.  Subnuclear compartmentalization of immunoglobulin loci during lymphocyte development.

Authors:  Steven T Kosak; Jane A Skok; Kay L Medina; Roy Riblet; Michelle M Le Beau; Amanda G Fisher; Harinder Singh
Journal:  Science       Date:  2002-04-05       Impact factor: 47.728

Review 2.  The bounty of RAGs: recombination signal complexes and reaction outcomes.

Authors:  Patrick C Swanson
Journal:  Immunol Rev       Date:  2004-08       Impact factor: 12.988

3.  RAG proteins shepherd double-strand breaks to a specific pathway, suppressing error-prone repair, but RAG nicking initiates homologous recombination.

Authors:  Gregory S Lee; Matthew B Neiditch; Sandra S Salus; David B Roth
Journal:  Cell       Date:  2004-04-16       Impact factor: 41.582

4.  Regulation of T cell receptor beta allelic exclusion at a level beyond accessibility.

Authors:  Annette Jackson; Hrisavgi D Kondilis; Bernard Khor; Barry P Sleckman; Michael S Krangel
Journal:  Nat Immunol       Date:  2005-01-09       Impact factor: 25.606

Review 5.  Nucleosome displacement in transcription.

Authors:  Jerry L Workman
Journal:  Genes Dev       Date:  2006-08-01       Impact factor: 11.361

6.  A PHD finger motif in the C terminus of RAG2 modulates recombination activity.

Authors:  Sheryl K Elkin; Dmitri Ivanov; Mark Ewalt; Colin G Ferguson; Sven G Hyberts; Zhen-Yu J Sun; Glenn D Prestwich; Junying Yuan; Gerhard Wagner; Marjorie A Oettinger; Or P Gozani
Journal:  J Biol Chem       Date:  2005-06-17       Impact factor: 5.157

Review 7.  The mechanism of V(D)J joining: lessons from molecular, immunological, and comparative analyses.

Authors:  S M Lewis
Journal:  Adv Immunol       Date:  1994       Impact factor: 3.543

8.  Deletion of germline promoter PD beta 1 from the TCR beta locus causes hypermethylation that impairs D beta 1 recombination by multiple mechanisms.

Authors:  C E Whitehurst; M S Schlissel; J Chen
Journal:  Immunity       Date:  2000-11       Impact factor: 31.745

Review 9.  Mechanics of T cell receptor gene rearrangement.

Authors:  Michael S Krangel
Journal:  Curr Opin Immunol       Date:  2009-04-09       Impact factor: 7.486

10.  Essential function for SWI-SNF chromatin-remodeling complexes in the promoter-directed assembly of Tcrb genes.

Authors:  Oleg Osipovich; Robin Milley Cobb; Kenneth J Oestreich; Steven Pierce; Pierre Ferrier; Eugene M Oltz
Journal:  Nat Immunol       Date:  2007-06-24       Impact factor: 25.606

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  249 in total

1.  Regulation of TCRβ allelic exclusion by gene segment proximity and accessibility.

Authors:  Hrisavgi D Kondilis-Mangum; Han-Yu Shih; Grace Mahowald; Barry P Sleckman; Michael S Krangel
Journal:  J Immunol       Date:  2011-11-11       Impact factor: 5.422

2.  Enhancers located in heavy chain regulatory region (hs3a, hs1,2, hs3b, and hs4) are dispensable for diversity of VDJ recombination.

Authors:  Pauline Rouaud; Christelle Vincent-Fabert; Remi Fiancette; Michel Cogné; Eric Pinaud; Yves Denizot
Journal:  J Biol Chem       Date:  2012-01-23       Impact factor: 5.157

3.  Highly diverse TCRα chain repertoire of pre-immune CD8⁺ T cells reveals new insights in gene recombination.

Authors:  Raphael Genolet; Brian J Stevenson; Laurent Farinelli; Magne Osterås; Immanuel F Luescher
Journal:  EMBO J       Date:  2012-02-28       Impact factor: 11.598

4.  Mechanistic basis for RAG discrimination between recombination sites and the off-target sites of human lymphomas.

Authors:  Noriko Shimazaki; Amjad Askary; Patrick C Swanson; Michael R Lieber
Journal:  Mol Cell Biol       Date:  2011-11-07       Impact factor: 4.272

Review 5.  Immunoglobulin class-switch DNA recombination: induction, targeting and beyond.

Authors:  Zhenming Xu; Hong Zan; Egest J Pone; Thach Mai; Paolo Casali
Journal:  Nat Rev Immunol       Date:  2012-06-25       Impact factor: 53.106

Review 6.  Combinatorial mechanisms regulating AID-dependent DNA deamination: interacting proteins and post-translational modifications.

Authors:  Bao Q Vuong; Jayanta Chaudhuri
Journal:  Semin Immunol       Date:  2012-07-06       Impact factor: 11.130

7.  To κ(+) B or not to κ(+) B.

Authors:  Megan R Fisher; Craig H Bassing
Journal:  Nat Immunol       Date:  2015-10       Impact factor: 25.606

8.  RAG1 targeting in the genome is dominated by chromatin interactions mediated by the non-core regions of RAG1 and RAG2.

Authors:  Yaakov Maman; Grace Teng; Rashu Seth; Steven H Kleinstein; David G Schatz
Journal:  Nucleic Acids Res       Date:  2016-07-19       Impact factor: 16.971

Review 9.  Role of recombination activating genes in the generation of antigen receptor diversity and beyond.

Authors:  Mayilaadumveettil Nishana; Sathees C Raghavan
Journal:  Immunology       Date:  2012-12       Impact factor: 7.397

10.  Peripheral subnuclear positioning suppresses Tcrb recombination and segregates Tcrb alleles from RAG2.

Authors:  Elizabeth A W Chan; Grace Teng; Elizabeth Corbett; Kingshuk Roy Choudhury; Craig H Bassing; David G Schatz; Michael S Krangel
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-11       Impact factor: 11.205

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