Literature DB >> 25019813

Torque correlation length and stochastic twist dynamics of DNA.

Edward J Banigan1, John F Marko2.   

Abstract

We introduce a short correlation length for torque in twisting-stiff biomolecules, which is necessary for the physical property that torque fluctuations be finite in amplitude. We develop a nonequilibrium theory of dynamics of DNA twisting which predicts two crossover time scales for temporal torque correlations in single-molecule experiments. Bending fluctuations can be included, and at linear order we find that they do not affect the twist dynamics. However, twist fluctuations affect bending, and we predict the spatial inhomogeneity of twist, torque, and buckling arising in nonequilibrium "rotor-bead" experiments.

Entities:  

Mesh:

Substances:

Year:  2014        PMID: 25019813      PMCID: PMC4141913          DOI: 10.1103/PhysRevE.89.062706

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  24 in total

1.  Transport of torsional stress in DNA.

Authors:  P Nelson
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-07       Impact factor: 11.205

2.  Effect of internal friction on biofilament dynamics.

Authors:  Michael G Poirier; John F Marko
Journal:  Phys Rev Lett       Date:  2002-05-16       Impact factor: 9.161

3.  Geometry of twist transport in a rotating elastic rod.

Authors:  Hirofumi Wada
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2011-10-13

4.  Torque measurements reveal sequence-specific cooperative transitions in supercoiled DNA.

Authors:  Florian C Oberstrass; Louis E Fernandes; Zev Bryant
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-02       Impact factor: 11.205

5.  Magnetic torque tweezers: measuring torsional stiffness in DNA and RecA-DNA filaments.

Authors:  Jan Lipfert; Jacob W J Kerssemakers; Tessa Jager; Nynke H Dekker
Journal:  Nat Methods       Date:  2010-10-17       Impact factor: 28.547

6.  Magnetic tweezers measurement of single molecule torque.

Authors:  Alfredo Celedon; Ilana M Nodelman; Bridget Wildt; Rohit Dewan; Peter Searson; Denis Wirtz; Gregory D Bowman; Sean X Sun
Journal:  Nano Lett       Date:  2009-04       Impact factor: 11.189

7.  Torsional directed walks, entropic elasticity, and DNA twist stiffness.

Authors:  J D Moroz; P Nelson
Journal:  Proc Natl Acad Sci U S A       Date:  1997-12-23       Impact factor: 11.205

8.  Probing allostery through DNA.

Authors:  Sangjin Kim; Erik Broströmer; Dong Xing; Jianshi Jin; Shasha Chong; Hao Ge; Siyuan Wang; Chan Gu; Lijiang Yang; Yi Qin Gao; Xiao-dong Su; Yujie Sun; X Sunney Xie
Journal:  Science       Date:  2013-02-15       Impact factor: 47.728

9.  Torque spectroscopy of DNA: base-pair stability, boundary effects, backbending, and breathing dynamics.

Authors:  Florian C Oberstrass; Louis E Fernandes; Paul Lebel; Zev Bryant
Journal:  Phys Rev Lett       Date:  2013-04-25       Impact factor: 9.161

10.  Gold rotor bead tracking for high-speed measurements of DNA twist, torque and extension.

Authors:  Paul Lebel; Aakash Basu; Florian C Oberstrass; Elsa M Tretter; Zev Bryant
Journal:  Nat Methods       Date:  2014-02-23       Impact factor: 28.547

View more
  2 in total

1.  Biophysics of protein-DNA interactions and chromosome organization.

Authors:  John F Marko
Journal:  Physica A       Date:  2015-01-15       Impact factor: 3.263

Review 2.  DNA Mechanics and Topology.

Authors:  Sumitabha Brahmachari; John F Marko
Journal:  Adv Exp Med Biol       Date:  2018       Impact factor: 2.622

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.