| Literature DB >> 32655638 |
Yu Fan1, Xuyu Gu1, Huiwen Pan1, Zhe Dai1, Chen Zou1, Zhenjun Gao2, Heng Zhang3.
Abstract
OBJECTIVE: To investigate the relationship between polymorphism of TNFRSF11 gene rs9533156 and rs2277438 and susceptibility to gastric cancer.Entities:
Year: 2020 PMID: 32655638 PMCID: PMC7327555 DOI: 10.1155/2020/4103264
Source DB: PubMed Journal: J Oncol ISSN: 1687-8450 Impact factor: 4.375
Primary information of TNFRSF11 gene rs9533156, rs2277438 polymorphisms.
| Genotyped SNPs | Gene | Chr pos (NCBI build 38) | Category | MAFa for Chinese in database | MAF in our controls ( |
| Genotyping method | Genotyping value (%) |
|---|---|---|---|---|---|---|---|---|
|
| 13 |
| Intron_variant | 0.439 | 0.315 | 0.719 | Snapshot | 98.64 |
|
| 13 |
| Intron_variant | 0.300 | 0.463 | 0.374 | Snapshot | 95.94 |
aMinor allele frequency and bHardy–Weinberg equilibrium.
Distribution of selected demographic variables and risk factors in gastric cancer cases and controls.
| Overall cases ( | Overall controls ( |
| ||
|---|---|---|---|---|
|
|
| |||
| Age (years) | 61.34 ± 11.097 | 62.31 ± 7.549 | 0.065 | |
|
| ||||
| Age (years) | ||||
| <62 | 268 (46.45) | 324 (47.79) | ||
| ≥62 | 309 (53.55) | 354 (52.21) | 0.635 | |
|
| ||||
| Sex | ||||
| Male | 394 (68.28) | 456 (67.26) | ||
| Female | 183 (31.72) | 222 (32.74) | 0.698 | |
|
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| Smoking status | ||||
| Never | 378 (65.51) | 493 (72.71) | ||
| Ever | 199 (34.49) | 185 (27.29) |
| |
|
| ||||
| Alcohol use | ||||
| Never | 453 (78.51) | 520 (76.70) | ||
| Ever | 124 (21.49) | 158 (23.30) | 0.443 | |
TNFRSF11 gene rs2277438 polymorphism in GC cases and controls and logistic regression analysis.
| Genotype | GC cases ( | Controls ( | Crude OR |
| Adjusted OR |
| ||
|---|---|---|---|---|---|---|---|---|
|
| (%) |
| (%) | |||||
|
| ||||||||
| AA | 284 | 49.56 | 310 | 46.62 | 1.00 | 1.00 | ||
| AG | 236 | 41.19 | 291 | 43.76 | 1.13 (0.89–1.43) | 0.310 | 0.87 (0.69–1.11) | 0.263 |
| GG | 53 | 9.25 | 64 | 9.62 | 1.02 (0.68–1.53) | 0.919 | 0.92 (0.75–1.13) | 0.427 |
| AG + GG | 289 | 50.44 | 355 | 53.38 | 1.00 (0.80–1.27) | 0.947 | 0.93 (0.83–1.04) | 0.228 |
| GG | 53 | 9.25 | 64 | 9.62 | 0.96 (0.65–1.40) | 0.822 | 0.96 (0.79–1.17) | 0.681 |
| AA + AG | 520 | 90.75 | 601 | 90.38 | 1.001 | 1.00 | ||
TNFRSF11 gene rs9533156 polymorphism in GC cases and controls and logistic regression analysis.
| Genotype | GC cases ( | Controls ( | Crude OR |
| Adjusted OR |
| ||
|---|---|---|---|---|---|---|---|---|
|
| (%) |
| (%) | |||||
|
| ||||||||
| TT | 139 | 24.91 | 192 | 29.72 | 1.00 | 1.00 | ||
| TC | 296 | 53.05 | 310 | 47.99 | 1.32 (1.00–1.73) |
| 1.33 (1.02–1.75) |
|
| CC | 123 | 22.04 | 144 | 22.29 | 1.18 (0.85–1.63) | 0.318 | 1.09 (0.93–1.29) | 0.294 |
| TC + CC | 419 | 75.09 | 454 | 70.28 | 1.28 (0.99–1.65) | 0.062 | 1.13 (0.99–1.29) | 0.056 |
| CC | 123 | 22.04 | 144 | 22.29 | 0.99 (0.75–1.30) | 0.918 | 0.99 (0.86–1.14) | 0.909 |
| TT + TC | 435 | 77.96 | 502 | 77.71 | 1.00 | 1.00 | ||
Analysis of rs9533156 and rs2277438 alleles between cases and controls.
| Locus | Variable | Case | Control |
| OR (95% CI) |
|---|---|---|---|---|---|
|
| A allele | 804 (70.16) | 911 (68.50) | ||
| G allele | 342 (29.84) | 419 (31.50) | 0.372 | 0.93 (0.78–1.09) | |
|
| |||||
|
| T Allele | 574 (51.43) | 694 (53.72) | ||
| C Allele | 542 (48.57) | 598 (46.28) | 0.264 | 1.09 (0.93–1.29) | |
Stratified analyses between rs2277438 polymorphism and risk by sex, age, smoking status, and alcohol consumption.
| Variable | (Case/control) | Adjusted OR (95% CI); | (AG + GG) VSAA | GGVS (AA + AG) | ||||
|---|---|---|---|---|---|---|---|---|
| AA | AG | GG | AA | AG | GG | |||
| Sex | ||||||||
| Male | 198/201 | 157/198 | 36/45 | 1.00 | 0.81 (0.60–1.07); | 0.81 (0.50–1.31); | 0.81 (0.61–1.06); | 0.90 (0.57–1.43); |
| Female | 86/109 | 79/93 | 17/19 | 1.00 | 1.08 (0.71–1.63); | 1.13 (0.56–2.31); | 1.09 (0.73–1.61); | 1.09 (0.55–2.18); |
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| Age | ||||||||
| <62 | 129/146 | 108/138 | 29/31 | 1.00 | 0.89 (0.63–1.25); | 1.06 (0.61–1.85); | 0.92 (0.66–1.27); | 1.12 (0.66–1.91); |
| ≥62 | 155/164 | 128/153 | 24/33 | 1.00 | 0.89 (0.64–1.22); | 0.77 (0.44–1.36); | 0.87 (0.64–1.18); | 0.82 (0.47–1.41); |
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| Smoking status | ||||||||
| Never | 189/230 | 154/207 | 33/49 | 1.00 | 0.91 (0.68–1.20); | 0.82 (0.51–1.33); | 0.89 (0.68–1.16); | 0.86 (0.50–1.36); |
| Ever | 95/80 | 82/84 | 20/15 | 1.00 | 0.82 (0.54–1.26); | 1.12 (0.54–2.24); | 0.87 (0.58–1.30); | 1.24 (0.61–2.49); |
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| Alcohol consumption | ||||||||
| Never | 223/237 | 182/224 | 46/52 | 1.00 | 0.86 (0.66–1.13); | 0.94 (0.61–1.46); | 0.88 (0.68–1.31); | 1.01 (0.66–1.53); |
| Ever | 61/73 | 54/67 | 7/12 | 1.00 | 0.97 (0.59–1.58); | 0.70 (0.26–1.88); | 0.94 (0.58–1.51); | 0.71 (0.27–1.86); |
Stratified analyses between rs9533156 polymorphism and risk by sex, age, smoking status, and alcohol consumption.
| Variable | (Case/control) | Adjusted OR (95% CI); | (TC + CC) VSTT | CCVS (TT + TC) | ||||
|---|---|---|---|---|---|---|---|---|
| TT | TC | CC | TT | TC | CC | |||
| Sex | ||||||||
| Male | 91/129 | 206/210 | 84/95 | 1.00 | 1.39 (1.00–1.93); | 1.25 (0.84–1.87); | 0.93 (0.67–1.30); | 1.01 (0.72–1.41); |
| Female | 48/63 | 90/100 | 39/49 | 1.00 | 1.18 (0.74–1.89); | 1.05 (0.59–1.84); | 1.14 (0.73–1.77); | 0.94 (0.58–1.52); |
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| Age | ||||||||
| <62 | 79/89 | 118/143 | 61/69 | 1.00 | 0.93 (0.63–1.37); | 0.99 (0.63–1.58); | 0.95 (0.66–1.37); | 1.00 (0.68–1.48); |
| ≥62 | 60/103 | 178/167 | 62/75 | 1.00 | 1.83 (1.25–2.68); | 1.42 (0.89–2.26); | 1.70 (1.18–2.45); | 0.94 (0.64–1.37); |
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| Smoking status | ||||||||
| Never | 87/146 | 201/227 | 80/96 | 1.00 | 1.49 (1.07–2.06); | 1.40 (0.94–2.08); | 1.46 (1.07–1.99); | 1.08 (0.77–1.51); |
| Ever | 52/46 | 95/83 | 43/48 | 1.00 | 1.01 (0.62–1.66); | 0.80 (0.45–1.40); | 0.93 (0.59–1.48); | 0.79 (0.49–1.26); |
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| Alcohol consumption | ||||||||
| Never | 109/153 | 235/241 | 96/101 | 1.00 | 1.37 (1.01–1.86); | 1.33 (0.92–1.94); | 1.36 (1.02–1.81); | 1.09 (0.80–1.50); |
| Ever | 30/39 | 61/69 | 27/43 | 1.00 | 1.15 (0.64–2.07); | 0.82 (0.42–1.61); | 1.02 (0.59–1.77); | 0.75 (0.43–1.30); |
Clinic factors of rs9533156 polymorphism on gastric cancer development.
| Group | TC + CC | TT | OR | 95% CI |
|
|---|---|---|---|---|---|
| Tumor size | |||||
| ≥2 cm | 360 (85.91) | 125 (80.13) | |||
| <2 cm | 59 (14.09) | 31 (19.87) | 1.751 | 1.078–2.845 |
|
|
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| Tumor location | |||||
| Fundus | 6 (1.70) | 2 (1.85) | |||
| Antrum | 256 (72.52) | 82 (75.93) | 0.961 | 0.190–4.853 | 0.962 |
| Body of the stomach | 91 (25.78) | 24 (22.22) | 0.791 | 0.150–4.171 | 0.676 |
|
| |||||
| Tumor differentiation | |||||
| Well | 12 (3.47) | 2 (1.71) | |||
| Moderate | 174 (50.29) | 64 (54.70) | 2.207 | 0.481–10.132 | 0.368 |
| Poor | 160 (46.24) | 51 (43.59) | 1.913 | 0.414–8.830 | 0.528 |
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| Pathological pattern | |||||
| Signet-ring cell carcinoma | 17 (4.20) | 6 (4.55) | |||
| Both | 5 (1.23) | 4 (3.03) | 0.178 | 0.183–0.991 | 0.407 |
| Adenocarcinoma | 383 (94.57) | 122 (92.42) | 0.903 | 0.348–2.340 | 0.833 |
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| Blood glucose | |||||
| Hyperglycemia | 114 (27.21) | 16 (11.51) | |||
| Nonhyperglycemia | 305 (72.79) | 123 (88.49) | 2.870 | 1.635–5.048 |
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