Literature DB >> 25000337

A modular tyrosine kinase deoxyribozyme with discrete aptamer and catalyst domains.

Victor Dokukin1, Scott K Silverman.   

Abstract

We assess the utility of integrating a predetermined aptamer DNA module adjacent to a random catalytic DNA region for identifying new deoxyribozymes by in vitro selection. By placing a known ATP aptamer next to an N40 random region, an explicitly modular DNA catalyst for tyrosine side chain phosphorylation is identified. The results have implications for broader identification of deoxyribozymes that function with small-molecule substrates.

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Year:  2014        PMID: 25000337      PMCID: PMC4126072          DOI: 10.1039/c4cc04253k

Source DB:  PubMed          Journal:  Chem Commun (Camb)        ISSN: 1359-7345            Impact factor:   6.222


  50 in total

Review 1.  Applications of aptamers as sensors.

Authors:  Eun Jeong Cho; Joo-Woon Lee; Andrew D Ellington
Journal:  Annu Rev Anal Chem (Palo Alto Calif)       Date:  2009       Impact factor: 10.745

2.  Assembly and activation of a kinase ribozyme.

Authors:  Donald H Burke; Steven S Rhee
Journal:  RNA       Date:  2010-10-08       Impact factor: 4.942

3.  Colorimetric sensing by using allosteric-DNAzyme-coupled rolling circle amplification and a peptide nucleic acid-organic dye probe.

Authors:  M Monsur Ali; Yingfu Li
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

4.  Small-molecule-triggered manipulation of DNA three-way junctions.

Authors:  Isabelle T Seemann; Vijay Singh; Mykhailo Azarkh; Malte Drescher; Jörg S Hartig
Journal:  J Am Chem Soc       Date:  2011-03-14       Impact factor: 15.419

Review 5.  A versatile endoribonuclease mimic made of DNA: characteristics and applications of the 8-17 RNA-cleaving DNAzyme.

Authors:  Kenny Schlosser; Yingfu Li
Journal:  Chembiochem       Date:  2010-05-03       Impact factor: 3.164

6.  Modulation of an RNA-branching deoxyribozyme by a small molecule.

Authors:  Kennedy O Alila; Dana A Baum
Journal:  Chem Commun (Camb)       Date:  2011-01-24       Impact factor: 6.222

7.  Aptamer/graphene oxide nanocomplex for in situ molecular probing in living cells.

Authors:  Ying Wang; Zhaohui Li; Dehong Hu; Chiann-Tso Lin; Jinghong Li; Yuehe Lin
Journal:  J Am Chem Soc       Date:  2010-07-14       Impact factor: 15.419

Review 8.  DNA as a versatile chemical component for catalysis, encoding, and stereocontrol.

Authors:  Scott K Silverman
Journal:  Angew Chem Int Ed Engl       Date:  2010-09-24       Impact factor: 15.336

9.  High specificity, electrochemical sandwich assays based on single aptamer sequences and suitable for the direct detection of small-molecule targets in blood and other complex matrices.

Authors:  Xiaolei Zuo; Yi Xiao; Kevin W Plaxco
Journal:  J Am Chem Soc       Date:  2009-05-27       Impact factor: 15.419

10.  Convergent donor and acceptor substrate utilization among kinase ribozymes.

Authors:  Elisa Biondi; David G Nickens; Samantha Warren; Dayal Saran; Donald H Burke
Journal:  Nucleic Acids Res       Date:  2010-05-28       Impact factor: 16.971

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  4 in total

1.  Pursuing DNA catalysts for protein modification.

Authors:  Scott K Silverman
Journal:  Acc Chem Res       Date:  2015-05-05       Impact factor: 22.384

Review 2.  Catalytic DNA: Scope, Applications, and Biochemistry of Deoxyribozymes.

Authors:  Scott K Silverman
Journal:  Trends Biochem Sci       Date:  2016-05-25       Impact factor: 13.807

3.  DNA-Catalyzed DNA Cleavage by a Radical Pathway with Well-Defined Products.

Authors:  Yujeong Lee; Paul C Klauser; Benjamin M Brandsen; Cong Zhou; Xinyi Li; Scott K Silverman
Journal:  J Am Chem Soc       Date:  2016-12-27       Impact factor: 15.419

4.  Biochemical and Biophysical Understanding of Metal Ion Selectivity of DNAzymes.

Authors:  Kevin Hwang; Parisa Hosseinzadeh; Yi Lu
Journal:  Inorganica Chim Acta       Date:  2016-04-23       Impact factor: 2.545

  4 in total

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