Literature DB >> 27695134

Biochemical and Biophysical Understanding of Metal Ion Selectivity of DNAzymes.

Kevin Hwang1, Parisa Hosseinzadeh2, Yi Lu3.   

Abstract

This review summarizes research into the metal-binding properties of catalytic DNAzymes, towards the goal of understanding the structural properties leading to metal ion specificity. Progress made and insight gained from a range of biochemical and biophysical techniques are covered, and promising directions for future investigations are discussed.

Entities:  

Keywords:  Metalloenzymes; catalytic DNA; deoxyribozymes; metal ion selectivity; metal sensors; metal-nucleic acid interactions

Year:  2016        PMID： 27695134      PMCID： PMC5042331          DOI： 10.1016/j.ica.2016.04.017

Source DB:  PubMed          Journal:  Inorganica Chim Acta        ISSN： 0020-1693            Impact factor:   2.545


  113 in total

1.  Characterization of G-quadruplex/hemin peroxidase: substrate specificity and inactivation kinetics.

Authors:  Xiaojuan Yang; Canliang Fang; Hongcheng Mei; Tianjun Chang; Zehui Cao; Dihua Shangguan
Journal:  Chemistry       Date:  2011-11-22       Impact factor: 5.236

Review 2.  RNA and DNA complexes with hemin [Fe(III) heme] are efficient peroxidases and peroxygenases: how do they do it and what does it mean?

Authors:  Dipankar Sen; Lester C H Poon
Journal:  Crit Rev Biochem Mol Biol       Date:  2011-09-29       Impact factor: 8.250

3.  Dissecting metal ion-dependent folding and catalysis of a single DNAzyme.

Authors:  Hee-Kyung Kim; Ivan Rasnik; Juewen Liu; Taekjip Ha; Yi Lu
Journal:  Nat Chem Biol       Date:  2007-10-28       Impact factor: 15.040

4.  MRI biosensor for lead detection based on the DNAzyme-induced catalytic reaction.

Authors:  Liguang Xu; Honghong Yin; Wei Ma; Libing Wang; Hua Kuang; Chuanlai Xu
Journal:  J Phys Chem B       Date:  2013-11-07       Impact factor: 2.991

5.  A contact photo-cross-linking investigation of the active site of the 8-17 deoxyribozyme.

Authors:  Yong Liu; Dipankar Sen
Journal:  J Mol Biol       Date:  2008-06-19       Impact factor: 5.469

6.  A smart T(1)-weighted MRI contrast agent for uranyl cations based on a DNAzyme-gadolinium conjugate.

Authors:  Weichen Xu; Hang Xing; Yi Lu
Journal:  Analyst       Date:  2013-11-07       Impact factor: 4.616

7.  Capping DNA with DNA.

Authors:  Y Li; Y Liu; R R Breaker
Journal:  Biochemistry       Date:  2000-03-21       Impact factor: 3.162

Review 8.  X-ray absorption spectroscopy.

Authors:  Junko Yano; Vittal K Yachandra
Journal:  Photosynth Res       Date:  2009 Nov-Dec       Impact factor: 3.573

9.  A DNA metalloenzyme with DNA ligase activity.

Authors:  B Cuenoud; J W Szostak
Journal:  Nature       Date:  1995-06-15       Impact factor: 49.962

10.  DNA-catalyzed sequence-specific hydrolysis of DNA.

Authors:  Madhavaiah Chandra; Amit Sachdeva; Scott K Silverman
Journal:  Nat Chem Biol       Date:  2009-08-16       Impact factor: 15.040
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  12 in total

Review 1.  Metal-Dependent DNAzymes for the Quantitative Detection of Metal Ions in Living Cells: Recent Progress, Current Challenges, and Latest Results on FRET Ratiometric Sensors.

Authors:  Kevin Hwang; Quanbing Mou; Ryan J Lake; Mengyi Xiong; Brandalynn Holland; Yi Lu
Journal:  Inorg Chem       Date:  2019-07-31       Impact factor: 5.165

2.  Near-Infrared Photothermally Activated DNAzyme-Gold Nanoshells for Imaging Metal Ions in Living Cells.

Authors:  Wenjing Wang; Nitya Sai Reddy Satyavolu; Zhenkun Wu; Jian-Rong Zhang; Jun-Jie Zhu; Yi Lu
Journal:  Angew Chem Int Ed Engl       Date:  2017-05-04       Impact factor: 15.336

Review 3.  DNAzymes as Activity-Based Sensors for Metal Ions: Recent Applications, Demonstrated Advantages, Current Challenges, and Future Directions.

Authors:  Ryan J Lake; Zhenglin Yang; JingJing Zhang; Yi Lu
Journal:  Acc Chem Res       Date:  2019-11-13       Impact factor: 22.384

4.  Imaging Endogenous Metal Ions in Living Cells Using a DNAzyme-Catalytic Hairpin Assembly Probe.

Authors:  Zhenkun Wu; Huanhuan Fan; Nitya Sai Reddy Satyavolu; WenJing Wang; Ryan Lake; Jian-Hui Jiang; Yi Lu
Journal:  Angew Chem Int Ed Engl       Date:  2017-06-23       Impact factor: 15.336

Review 5.  Nucleic-Acid Structures as Intracellular Probes for Live Cells.

Authors:  Devleena Samanta; Sasha B Ebrahimi; Chad A Mirkin
Journal:  Adv Mater       Date:  2019-07-04       Impact factor: 30.849

6.  A highly specific sodium aptamer probed by 2-aminopurine for robust Na+ sensing.

Authors:  Wenhu Zhou; Jinsong Ding; Juewen Liu
Journal:  Nucleic Acids Res       Date:  2016-09-20       Impact factor: 16.971

7.  Cell Surface Engineering Using DNAzymes: Metal Ion Mediated Control of Cell-Cell Interactions.

Authors:  Ruo-Can Qian; Ze-Rui Zhou; Weijie Guo; Yuting Wu; Zhenglin Yang; Yi Lu
Journal:  J Am Chem Soc       Date:  2021-03-22       Impact factor: 16.383

Review 8.  Theranostic DNAzymes.

Authors:  Wenhu Zhou; Jinsong Ding; Juewen Liu
Journal:  Theranostics       Date:  2017-02-23       Impact factor: 11.556

9.  Misfolding of a DNAzyme for ultrahigh sodium selectivity over potassium.

Authors:  Yanping He; Da Chen; Po-Jung Jimmy Huang; Yibo Zhou; Lingzi Ma; Kexin Xu; Ronghua Yang; Juewen Liu
Journal:  Nucleic Acids Res       Date:  2018-11-02       Impact factor: 16.971

Review 10.  Catalytic Nucleic Acids: Biochemistry, Chemical Biology, Biosensors, and Nanotechnology.

Authors:  Lingzi Ma; Juewen Liu
Journal:  iScience       Date:  2020-01-02
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