Literature DB >> 20213779

A versatile endoribonuclease mimic made of DNA: characteristics and applications of the 8-17 RNA-cleaving DNAzyme.

Kenny Schlosser1, Yingfu Li.   

Abstract

Enzymes play a crucial role in all living organisms by accelerating the rates of a myriad of biochemical reactions that are necessary to sustain life. Although the vast majority of known enzymes are made of protein, in recent years it has become increasingly apparent that other molecular formats, like nucleic acids, can also serve in this capacity. DNAzymes (also known as deoxyribozymes) are synthetic enzymes made of short, single strands of deoxyribonucleic acid. These DNA-based enzymes offer the prospect of significant commercial utility, because they are exceptionally stable and can be produced very easily and inexpensively. The study of one particular DNAzyme, known as "8-17", has enhanced our understanding of DNAzyme-mediated catalysis. Moreover, the function of 8-17 has been regarded with special importance because it can catalyze sequence-specific cleavage of RNA, a reaction that has broad implications in biotechnology and biomedical fields. In this review, we explore the creation, characterization, and application of the 8-17 RNA-cleaving DNAzyme.

Mesh:

Substances:

Year:  2010        PMID: 20213779     DOI: 10.1002/cbic.200900786

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  31 in total

1.  Sequence Mutation and Structural Alteration Transform a Noncatalytic DNA Sequence into an Efficient RNA-Cleaving DNAzyme.

Authors:  Laura Chan; Kha Tram; Rachel Gysbers; Jimmy Gu; Yingfu Li
Journal:  J Mol Evol       Date:  2015-11-03       Impact factor: 2.395

2.  Searching for a DNAzyme Version of the Leadzyme.

Authors:  Runjhun Saran; Qingyun Chen; Juewen Liu
Journal:  J Mol Evol       Date:  2015-10-12       Impact factor: 2.395

3.  In vitro selection of metal ion-selective DNAzymes.

Authors:  Hannah E Ihms; Yi Lu
Journal:  Methods Mol Biol       Date:  2012

4.  Covalent tagging of phosphorylated peptides by phosphate-specific deoxyribozymes.

Authors:  Amit Sachdeva; Madhavaiah Chandra; Jagadeeswaran Chandrasekar; Scott K Silverman
Journal:  Chembiochem       Date:  2012-02-07       Impact factor: 3.164

5.  A Microsphere-Supported Lipid Bilayer Platform for DNA Reactions on a Fluid Surface.

Authors:  Aurora Fabry-Wood; Madalyn E Fetrow; Carl W Brown; Nicholas A Baker; Nadiezda Fernandez Oropeza; Andrew P Shreve; Gabriel A Montaño; Darko Stefanovic; Matthew R Lakin; Steven W Graves
Journal:  ACS Appl Mater Interfaces       Date:  2017-08-24       Impact factor: 9.229

6.  Photocaged DNAzymes as a general method for sensing metal ions in living cells.

Authors:  Kevin Hwang; Peiwen Wu; Taejin Kim; Lei Lei; Shiliang Tian; Yingxiao Wang; Yi Lu
Journal:  Angew Chem Int Ed Engl       Date:  2014-10-14       Impact factor: 15.336

Review 7.  Catalytic DNA: Scope, Applications, and Biochemistry of Deoxyribozymes.

Authors:  Scott K Silverman
Journal:  Trends Biochem Sci       Date:  2016-05-25       Impact factor: 13.807

8.  In vitro selection of a sodium-specific DNAzyme and its application in intracellular sensing.

Authors:  Seyed-Fakhreddin Torabi; Peiwen Wu; Claire E McGhee; Lu Chen; Kevin Hwang; Nan Zheng; Jianjun Cheng; Yi Lu
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-27       Impact factor: 11.205

9.  Identification of the Same Na(+)-Specific DNAzyme Motif from Two In Vitro Selections Under Different Conditions.

Authors:  Seyed-Fakhreddin Torabi; Yi Lu
Journal:  J Mol Evol       Date:  2015-11-17       Impact factor: 2.395

10.  DNA Oligonucleotide 3'-Phosphorylation by a DNA Enzyme.

Authors:  Alison J Camden; Shannon M Walsh; Sarah H Suk; Scott K Silverman
Journal:  Biochemistry       Date:  2016-04-26       Impact factor: 3.162

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.