Literature DB >> 24979793

Algorithms, games, and evolution.

Erick Chastain1, Adi Livnat2, Christos Papadimitriou3, Umesh Vazirani4.   

Abstract

Even the most seasoned students of evolution, starting with Darwin himself, have occasionally expressed amazement that the mechanism of natural selection has produced the whole of Life as we see it around us. There is a computational way to articulate the same amazement: "What algorithm could possibly achieve all this in a mere three and a half billion years?" In this paper we propose an answer: We demonstrate that in the regime of weak selection, the standard equations of population genetics describing natural selection in the presence of sex become identical to those of a repeated game between genes played according to multiplicative weight updates (MWUA), an algorithm known in computer science to be surprisingly powerful and versatile. MWUA maximizes a tradeoff between cumulative performance and entropy, which suggests a new view on the maintenance of diversity in evolution.

Keywords:  coordination games; learning algorithms

Mesh:

Year:  2014        PMID: 24979793      PMCID: PMC4115542          DOI: 10.1073/pnas.1406556111

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  9 in total

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Authors:  T Nagylaki; J Hofbauer; P Brunovský
Journal:  J Math Biol       Date:  1999-02       Impact factor: 2.259

2.  A review of some fundamental concepts and problems of population genetics.

Authors:  T DOBZHANSKY
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3.  Selectionism and neutralism in molecular evolution.

Authors:  Masatoshi Nei
Journal:  Mol Biol Evol       Date:  2005-08-24       Impact factor: 16.240

Review 4.  The evolutionary enigma of sex.

Authors:  Sarah P Otto
Journal:  Am Nat       Date:  2009-07       Impact factor: 3.926

Review 5.  Why sex and recombination?

Authors:  N H Barton; B Charlesworth
Journal:  Science       Date:  1998-09-25       Impact factor: 47.728

6.  Evolutionary rate at the molecular level.

Authors:  M Kimura
Journal:  Nature       Date:  1968-02-17       Impact factor: 49.962

7.  The evolution of multilocus systems under weak selection.

Authors:  T Nagylaki
Journal:  Genetics       Date:  1993-06       Impact factor: 4.562

8.  Individual histories and selection in heterogeneous populations.

Authors:  Stanislas Leibler; Edo Kussell
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-02       Impact factor: 11.205

9.  A molecular approach to the study of genic heterozygosity in natural populations. II. Amount of variation and degree of heterozygosity in natural populations of Drosophila pseudoobscura.

Authors:  R C Lewontin; J L Hubby
Journal:  Genetics       Date:  1966-08       Impact factor: 4.562

  9 in total
  12 in total

1.  Algorithms, complexity, and the sciences.

Authors:  Christos Papadimitriou
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-27       Impact factor: 11.205

2.  Process Information and Evolution.

Authors:  Erick Chastain; Cameron Smith
Journal:  IEEE Trans Mol Biol Multiscale Commun       Date:  2016-12

3.  Diverse forms of selection in evolution and computer science.

Authors:  Nicholas H Barton; Sebastian Novak; Tiago Paixão
Journal:  Proc Natl Acad Sci U S A       Date:  2014-07-09       Impact factor: 11.205

4.  Selection Limits to Adaptive Walks on Correlated Landscapes.

Authors:  Jorge Pérez Heredia; Barbora Trubenová; Dirk Sudholt; Tiago Paixão
Journal:  Genetics       Date:  2016-11-23       Impact factor: 4.562

5.  Simplification, Innateness, and the Absorption of Meaning from Context: How Novelty Arises from Gradual Network Evolution.

Authors:  Adi Livnat
Journal:  Evol Biol       Date:  2017-03-11       Impact factor: 3.119

6.  Resampling the pool of genotypic possibilities: an adaptive function of sexual reproduction.

Authors:  Donal A Hickey; G Brian Golding
Journal:  BMC Ecol Evol       Date:  2021-06-12

7.  Toward a unifying framework for evolutionary processes.

Authors:  Tiago Paixão; Golnaz Badkobeh; Nick Barton; Doğan Çörüş; Duc-Cuong Dang; Tobias Friedrich; Per Kristian Lehre; Dirk Sudholt; Andrew M Sutton; Barbora Trubenová
Journal:  J Theor Biol       Date:  2015-07-26       Impact factor: 2.691

8.  Evolutionary Connectionism: Algorithmic Principles Underlying the Evolution of Biological Organisation in Evo-Devo, Evo-Eco and Evolutionary Transitions.

Authors:  Richard A Watson; Rob Mills; C L Buckley; Kostas Kouvaris; Adam Jackson; Simon T Powers; Chris Cox; Simon Tudge; Adam Davies; Loizos Kounios; Daniel Power
Journal:  Evol Biol       Date:  2015-12-08       Impact factor: 3.119

9.  Adaptation, fitness landscape learning and fast evolution.

Authors:  John Reinitz; Sergey Vakulenko; Dmitri Grigoriev; Andreas Weber
Journal:  F1000Res       Date:  2019-04-01

10.  Genetic codes optimized as a traveling salesman problem.

Authors:  Oliver Attie; Brian Sulkow; Chong Di; Weigang Qiu
Journal:  PLoS One       Date:  2019-10-28       Impact factor: 3.240

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