Literature DB >> 25349382

Algorithms, complexity, and the sciences.

Christos Papadimitriou1.   

Abstract

Algorithms, perhaps together with Moore's law, compose the engine of the information technology revolution, whereas complexity--the antithesis of algorithms--is one of the deepest realms of mathematical investigation. After introducing the basic concepts of algorithms and complexity, and the fundamental complexity classes P (polynomial time) and NP (nondeterministic polynomial time, or search problems), we discuss briefly the P vs. NP problem. We then focus on certain classes between P and NP which capture important phenomena in the social and life sciences, namely the Nash equlibrium and other equilibria in economics and game theory, and certain processes in population genetics and evolution. Finally, an algorithm known as multiplicative weights update (MWU) provides an algorithmic interpretation of the evolution of allele frequencies in a population under sex and weak selection. All three of these equivalences are rife with domain-specific implications: The concept of Nash equilibrium may be less universal--and therefore less compelling--than has been presumed; selection on gene interactions may entail the maintenance of genetic variation for longer periods than selection on single alleles predicts; whereas MWU can be shown to maximize, for each gene, a convex combination of the gene's cumulative fitness in the population and the entropy of the allele distribution, an insight that may be pertinent to the maintenance of variation in evolution.

Entities:  

Keywords:  complexity of equilibria; lens of computation; multiplicative weights update

Year:  2014        PMID: 25349382      PMCID: PMC4234620          DOI: 10.1073/pnas.1416954111

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  9 in total

1.  Near-neutrality in evolution of genes and gene regulation.

Authors:  Tomoko Ohta
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-02       Impact factor: 11.205

2.  Analysis of the subtractive algorithm for greatest common divisors.

Authors:  A C Yao; D E Knuth
Journal:  Proc Natl Acad Sci U S A       Date:  1975-12       Impact factor: 11.205

3.  AN ALGORITHM FOR EQUILIBRIUM POINTS IN BIMATRIX GAMES.

Authors:  H W Kuhn
Journal:  Proc Natl Acad Sci U S A       Date:  1961-10       Impact factor: 11.205

Review 4.  Why sex and recombination?

Authors:  N H Barton; B Charlesworth
Journal:  Science       Date:  1998-09-25       Impact factor: 47.728

5.  An impossibility theorem for price-adjustment mechanisms.

Authors:  Christos H Papadimitriou; Mihalis Yannakakis
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-19       Impact factor: 11.205

Review 6.  Population genetic perspectives on the evolution of recombination.

Authors:  M W Feldman; S P Otto; F B Christiansen
Journal:  Annu Rev Genet       Date:  1996       Impact factor: 16.830

7.  Algorithms, games, and evolution.

Authors:  Erick Chastain; Adi Livnat; Christos Papadimitriou; Umesh Vazirani
Journal:  Proc Natl Acad Sci U S A       Date:  2014-06-16       Impact factor: 11.205

8.  The evolution of multilocus systems under weak selection.

Authors:  T Nagylaki
Journal:  Genetics       Date:  1993-06       Impact factor: 4.562

9.  Interaction-based evolution: how natural selection and nonrandom mutation work together.

Authors:  Adi Livnat
Journal:  Biol Direct       Date:  2013-10-18       Impact factor: 4.540

  9 in total
  4 in total

1.  Profile of Christos Papadimitriou.

Authors:  Farooq Ahmed
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-27       Impact factor: 11.205

2.  GARN: Sampling RNA 3D Structure Space with Game Theory and Knowledge-Based Scoring Strategies.

Authors:  Mélanie Boudard; Julie Bernauer; Dominique Barth; Johanne Cohen; Alain Denise
Journal:  PLoS One       Date:  2015-08-27       Impact factor: 3.240

3.  Repayment policy for multiple loans.

Authors:  Yasmin Agueda Rios-Solis; Mario Alberto Saucedo-Espinosa; Gabriel Arturo Caballero-Robledo
Journal:  PLoS One       Date:  2017-04-21       Impact factor: 3.240

4.  Genetic codes optimized as a traveling salesman problem.

Authors:  Oliver Attie; Brian Sulkow; Chong Di; Weigang Qiu
Journal:  PLoS One       Date:  2019-10-28       Impact factor: 3.240

  4 in total

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