Literature DB >> 24974030

DNA curtains: novel tools for imaging protein-nucleic acid interactions at the single-molecule level.

Bridget E Collins1, Ling F Ye1, Daniel Duzdevich1, Eric C Greene2.   

Abstract

Interactions between proteins and nucleic acids are at the molecular foundations of most key biological processes, including DNA replication, genome maintenance, the regulation of gene expression, and chromosome segregation. A complete understanding of these types of biological processes requires tackling questions with a range of different techniques, such as genetics, cell biology, molecular biology, biochemistry, and structural biology. Here, we describe a novel experimental approach called "DNA curtains" that can be used to complement and extend these more traditional techniques by providing real-time information about protein-nucleic acid interactions at the level of single molecules. We describe general features of the DNA curtain technology and its application to the study of protein-nucleic acid interactions in vitro. We also discuss some future developments that will help address crucial challenges to the field of single-molecule biology.
© 2014 Elsevier Inc. All rights reserved.

Keywords:  Lipid bilayer; Nanofabrication; One-dimensional diffusion; Single molecule; Single-stranded DNA; Total internal reflection fluorescence microscopy; Translocation

Mesh:

Substances:

Year:  2014        PMID: 24974030     DOI: 10.1016/B978-0-12-420138-5.00012-4

Source DB:  PubMed          Journal:  Methods Cell Biol        ISSN: 0091-679X            Impact factor:   1.441


  24 in total

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Review 4.  DNA Sequence Alignment during Homologous Recombination.

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Review 5.  Time for remodeling: SNF2-family DNA translocases in replication fork metabolism and human disease.

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6.  Dynamic interactions of the homologous pairing 2 (Hop2)-meiotic nuclear divisions 1 (Mnd1) protein complex with meiotic presynaptic filaments in budding yeast.

Authors:  J Brooks Crickard; Youngho Kwon; Patrick Sung; Eric C Greene
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7.  Structures and single-molecule analysis of bacterial motor nuclease AdnAB illuminate the mechanism of DNA double-strand break resection.

Authors:  Ning Jia; Mihaela C Unciuleac; Chaoyou Xue; Eric C Greene; Dinshaw J Patel; Stewart Shuman
Journal:  Proc Natl Acad Sci U S A       Date:  2019-11-18       Impact factor: 11.205

8.  Simultaneous Manipulation and Super-Resolution Fluorescence Imaging of Individual Kinetochores Coupled to Microtubule Tips.

Authors:  Yi Deng; Charles L Asbury
Journal:  Methods Mol Biol       Date:  2017

9.  Characterizing Single-Molecule Conformational Changes Under Shear Flow with Fluorescence Microscopy.

Authors:  Yi Wang; Megan E Blauch; Avani V Pisapati; Nathan J Wittenberg; Xuanhong Cheng; X Frank Zhang
Journal:  J Vis Exp       Date:  2020-01-25       Impact factor: 1.355

10.  Nano-mechanical measurements of protein-DNA interactions with a silicon nitride pulley.

Authors:  Min Ju Shon; Adam E Cohen
Journal:  Nucleic Acids Res       Date:  2015-09-03       Impact factor: 16.971

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