Literature DB >> 26643847

Probing molecular choreography through single-molecule biochemistry.

Antoine M van Oijen1,2,3, Nicholas E Dixon1,2,3.   

Abstract

Single-molecule approaches are having a dramatic impact on views of how proteins work. The ability to observe molecular properties at the single-molecule level allows characterization of subpopulations and acquisition of detailed kinetic information that would otherwise be hidden in the averaging over an ensemble of molecules. In this Perspective, we discuss how such approaches have successfully been applied to in vitro-reconstituted systems of increasing complexity.

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Year:  2015        PMID: 26643847     DOI: 10.1038/nsmb.3119

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  64 in total

Review 1.  Single-molecule fluorescence spectroscopy and microscopy of biomolecular motors.

Authors:  Erwin J G Peterman; Hernando Sosa; W E Moerner
Journal:  Annu Rev Phys Chem       Date:  2004       Impact factor: 12.703

Review 2.  Structural dynamics and processing of nucleic acids revealed by single-molecule spectroscopy.

Authors:  Taekjip Ha
Journal:  Biochemistry       Date:  2004-04-13       Impact factor: 3.162

3.  Chikungunya virus fusion properties elucidated by single-particle and bulk approaches.

Authors:  Mareike K S van Duijl-Richter; Jelle S Blijleven; Antoine M van Oijen; Jolanda M Smit
Journal:  J Gen Virol       Date:  2015-04-13       Impact factor: 3.891

4.  Prediction of the human membrane proteome.

Authors:  Linn Fagerberg; Kalle Jonasson; Gunnar von Heijne; Mathias Uhlén; Lisa Berglund
Journal:  Proteomics       Date:  2010-03       Impact factor: 3.984

5.  An optical trap combined with three-color FRET.

Authors:  Sanghwa Lee; Sungchul Hohng
Journal:  J Am Chem Soc       Date:  2013-11-26       Impact factor: 15.419

Review 6.  A practical guide to single-molecule FRET.

Authors:  Rahul Roy; Sungchul Hohng; Taekjip Ha
Journal:  Nat Methods       Date:  2008-06       Impact factor: 28.547

7.  Relating influenza virus membrane fusion kinetics to stoichiometry of neutralizing antibodies at the single-particle level.

Authors:  Jason J Otterstrom; Boerries Brandenburg; Martin H Koldijk; Jarek Juraszek; Chan Tang; Samaneh Mashaghi; Ted Kwaks; Jaap Goudsmit; Ronald Vogels; Robert H E Friesen; Antoine M van Oijen
Journal:  Proc Natl Acad Sci U S A       Date:  2014-11-17       Impact factor: 11.205

8.  Crystal structure of an asymmetric trimer of a bacterial glutamate transporter homolog.

Authors:  Grégory Verdon; Olga Boudker
Journal:  Nat Struct Mol Biol       Date:  2012-02-12       Impact factor: 15.369

Review 9.  Viral membrane fusion.

Authors:  Stephen C Harrison
Journal:  Virology       Date:  2015-04-10       Impact factor: 3.616

10.  Substrate-modulated gating dynamics in a Na+-coupled neurotransmitter transporter homologue.

Authors:  Yongfang Zhao; Daniel S Terry; Lei Shi; Matthias Quick; Harel Weinstein; Scott C Blanchard; Jonathan A Javitch
Journal:  Nature       Date:  2011-04-24       Impact factor: 49.962

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  6 in total

1.  Tunability of DNA Polymerase Stability during Eukaryotic DNA Replication.

Authors:  Jacob S Lewis; Lisanne M Spenkelink; Grant D Schauer; Olga Yurieva; Stefan H Mueller; Varsha Natarajan; Gurleen Kaur; Claire Maher; Callum Kay; Michael E O'Donnell; Antoine M van Oijen
Journal:  Mol Cell       Date:  2019-11-05       Impact factor: 17.970

2.  Interactions of a Polypeptide with a Protein Nanopore Under Crowding Conditions.

Authors:  Motahareh Ghahari Larimi; Lauren Ashley Mayse; Liviu Movileanu
Journal:  ACS Nano       Date:  2019-04-03       Impact factor: 15.881

3.  Recycling of single-stranded DNA-binding protein by the bacterial replisome.

Authors:  Lisanne M Spenkelink; Jacob S Lewis; Slobodan Jergic; Zhi-Qiang Xu; Andrew Robinson; Nicholas E Dixon; Antoine M van Oijen
Journal:  Nucleic Acids Res       Date:  2019-05-07       Impact factor: 16.971

4.  A Primase-Induced Conformational Switch Controls the Stability of the Bacterial Replisome.

Authors:  Enrico Monachino; Slobodan Jergic; Jacob S Lewis; Zhi-Qiang Xu; Allen T Y Lo; Valerie L O'Shea; James M Berger; Nicholas E Dixon; Antoine M van Oijen
Journal:  Mol Cell       Date:  2020-05-27       Impact factor: 17.970

Review 5.  Watching cellular machinery in action, one molecule at a time.

Authors:  Enrico Monachino; Lisanne M Spenkelink; Antoine M van Oijen
Journal:  J Cell Biol       Date:  2016-12-15       Impact factor: 10.539

6.  Disentangling the recognition complexity of a protein hub using a nanopore.

Authors:  Lauren Ashley Mayse; Ali Imran; Motahareh Ghahari Larimi; Michael S Cosgrove; Aaron James Wolfe; Liviu Movileanu
Journal:  Nat Commun       Date:  2022-02-21       Impact factor: 14.919

  6 in total

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