Literature DB >> 24970895

The C-terminal tails of the bacterial chaperonin GroEL stimulate protein folding by directly altering the conformation of a substrate protein.

Jeremy Weaver1, Hays S Rye2.   

Abstract

Many essential cellular proteins fold only with the assistance of chaperonin machines like the GroEL-GroES system of Escherichia coli. However, the mechanistic details of assisted protein folding by GroEL-GroES remain the subject of ongoing debate. We previously demonstrated that GroEL-GroES enhances the productive folding of a kinetically trapped substrate protein through unfolding, where both binding energy and the energy of ATP hydrolysis are used to disrupt the inhibitory misfolded states. Here, we show that the intrinsically disordered yet highly conserved C-terminal sequence of the GroEL subunits directly contributes to substrate protein unfolding. Interactions between the C terminus and the non-native substrate protein alter the binding position of the substrate protein on the GroEL apical surface. The C-terminal tails also impact the conformational state of the substrate protein during capture and encapsulation on the GroEL ring. Importantly, removal of the C termini results in slower overall folding, reducing the fraction of the substrate protein that commits quickly to a productive folding pathway and slowing several kinetically distinct folding transitions that occur inside the GroEL-GroES cavity. The conserved C-terminal tails of GroEL are thus important for protein folding from the beginning to the end of the chaperonin reaction cycle.
© 2014 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  Chaperone; Chaperonin; GroEL; Hsp60; Molecular Chaperone; Protein Dynamic; Protein Folding; Protein Misfolding

Mesh:

Substances:

Year:  2014        PMID: 24970895      PMCID: PMC4132819          DOI: 10.1074/jbc.M114.577205

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  65 in total

1.  FoldEco: a model for proteostasis in E. coli.

Authors:  Evan T Powers; David L Powers; Lila M Gierasch
Journal:  Cell Rep       Date:  2012-03-29       Impact factor: 9.423

2.  Single-molecule study on the decay process of the football-shaped GroEL-GroES complex using zero-mode waveguides.

Authors:  Tomoya Sameshima; Ryo Iizuka; Taro Ueno; Junichi Wada; Mutsuko Aoki; Naonobu Shimamoto; Iwao Ohdomari; Takashi Tanii; Takashi Funatsu
Journal:  J Biol Chem       Date:  2010-05-28       Impact factor: 5.157

3.  GroEL/ES buffering and compensatory mutations promote protein evolution by stabilizing folding intermediates.

Authors:  Kirsten T Wyganowski; Miriam Kaltenbach; Nobuhiko Tokuriki
Journal:  J Mol Biol       Date:  2013-06-28       Impact factor: 5.469

4.  Symmetric GroEL:GroES2 complexes are the protein-folding functional form of the chaperonin nanomachine.

Authors:  Dong Yang; Xiang Ye; George H Lorimer
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-28       Impact factor: 11.205

5.  Substrate protein switches GroE chaperonins from asymmetric to symmetric cycling by catalyzing nucleotide exchange.

Authors:  Xiang Ye; George H Lorimer
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-28       Impact factor: 11.205

Review 6.  Molecular chaperones in protein folding and proteostasis.

Authors:  F Ulrich Hartl; Andreas Bracher; Manajit Hayer-Hartl
Journal:  Nature       Date:  2011-07-20       Impact factor: 49.962

7.  Visualizing GroEL/ES in the act of encapsulating a folding protein.

Authors:  Dong-Hua Chen; Damian Madan; Jeremy Weaver; Zong Lin; Gunnar F Schröder; Wah Chiu; Hays S Rye
Journal:  Cell       Date:  2013-06-06       Impact factor: 41.582

8.  Revisiting the contribution of negative charges on the chaperonin cage wall to the acceleration of protein folding.

Authors:  Fumihiro Motojima; Yuko Motojima-Miyazaki; Masasuke Yoshida
Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-07       Impact factor: 11.205

9.  The effect of chaperonin buffering on protein evolution.

Authors:  Tom A Williams; Mario A Fares
Journal:  Genome Biol Evol       Date:  2010-07-21       Impact factor: 3.416

10.  Catalysis of protein folding by chaperones accelerates evolutionary dynamics in adapting cell populations.

Authors:  Murat Cetinbaş; Eugene I Shakhnovich
Journal:  PLoS Comput Biol       Date:  2013-11-07       Impact factor: 4.475

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  20 in total

1.  Disassembly/reassembly strategy for the production of highly pure GroEL, a tetradecameric supramolecular machine, suitable for quantitative NMR, EPR and mutational studies.

Authors:  Marielle A Wälti; G Marius Clore
Journal:  Protein Expr Purif       Date:  2017-09-22       Impact factor: 1.650

2.  Protein folding in the cell, from atom to organism.

Authors:  Jeffrey L Brodsky; Patricia L Clark
Journal:  FASEB J       Date:  2014-12       Impact factor: 5.191

3.  Effects of C-terminal Truncation of Chaperonin GroEL on the Yield of In-cage Folding of the Green Fluorescent Protein.

Authors:  So Ishino; Yasushi Kawata; Hideki Taguchi; Naoko Kajimura; Katsumi Matsuzaki; Masaru Hoshino
Journal:  J Biol Chem       Date:  2015-04-17       Impact factor: 5.157

Review 4.  Chaperone-client interactions: Non-specificity engenders multifunctionality.

Authors:  Philipp Koldewey; Scott Horowitz; James C A Bardwell
Journal:  J Biol Chem       Date:  2017-06-15       Impact factor: 5.157

5.  Improved high-temperature ethanol production from sweet sorghum juice using Zymomonas mobilis overexpressing groESL genes.

Authors:  Anchittha Kaewchana; Atiya Techaparin; Nongluck Boonchot; Pornthap Thanonkeo; Preekamol Klanrit
Journal:  Appl Microbiol Biotechnol       Date:  2021-11-17       Impact factor: 4.813

6.  Extensive Sampling of the Cavity of the GroEL Nanomachine by Protein Substrates Probed by Paramagnetic Relaxation Enhancement.

Authors:  Marielle A Wälti; David S Libich; G Marius Clore
Journal:  J Phys Chem Lett       Date:  2018-06-07       Impact factor: 6.475

Review 7.  From chaperonins to Rubisco assembly and metabolic repair.

Authors:  Manajit Hayer-Hartl
Journal:  Protein Sci       Date:  2017-10-10       Impact factor: 6.725

8.  The dynamic conformational cycle of the group I chaperonin C-termini revealed via molecular dynamics simulation.

Authors:  Kevin M Dalton; Judith Frydman; Vijay S Pande
Journal:  PLoS One       Date:  2015-03-30       Impact factor: 3.240

9.  Essential functions linked with structural disorder in organisms of minimal genome.

Authors:  Rita Pancsa; Peter Tompa
Journal:  Biol Direct       Date:  2016-09-08       Impact factor: 4.540

Review 10.  How do chaperonins fold protein?

Authors:  Fumihiro Motojima
Journal:  Biophysics (Nagoya-shi)       Date:  2015-04-01
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