Literature DB >> 23285600

Estimation of the prior distribution of ground truth in the STAPLE algorithm: an empirical Bayesian approach.

Alireza Akhondi-Asl1, Simon K Warfield.   

Abstract

We present a new fusion algorithm for the segmentation and parcellation of magnetic resonance (MR) images of the brain. Our algorithm is a parametric empirical Bayesian extension of the STAPLE algorithm which uses the observations to accurately estimate the prior distribution of the hidden ground truth using an expectation maximization (EM) algorithm. We use IBSR dataset for the evaluation of our fusion algorithm. We segment 128 principle gray and white matter structures of the brain using our novel method and eight other state-of-the-art algorithms in the literature. Our prior distribution estimation strategy improves the accuracy of the fusion algorithm. It was shown that our new fusion algorithm has superior performance compared to the other state-of-the-art fusion methods in the literature.

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Year:  2012        PMID: 23285600      PMCID: PMC3675761          DOI: 10.1007/978-3-642-33415-3_73

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  13 in total

1.  Label fusion in atlas-based segmentation using a selective and iterative method for performance level estimation (SIMPLE).

Authors:  Thomas Robin Langerak; Uulke A van der Heide; Alexis N T J Kotte; Max A Viergever; Marco van Vulpen; Josien P W Pluim
Journal:  IEEE Trans Med Imaging       Date:  2010-07-26       Impact factor: 10.048

2.  Combination strategies in multi-atlas image segmentation: application to brain MR data.

Authors:  Xabier Artaechevarria; Arrate Munoz-Barrutia; Carlos Ortiz-de-Solorzano
Journal:  IEEE Trans Med Imaging       Date:  2009-02-18       Impact factor: 10.048

3.  Robust statistical fusion of image labels.

Authors:  Bennett A Landman; Andrew J Asman; Andrew G Scoggins; John A Bogovic; Fangxu Xing; Jerry L Prince
Journal:  IEEE Trans Med Imaging       Date:  2011-10-14       Impact factor: 10.048

4.  Adaptive local multi-atlas segmentation: application to the heart and the caudate nucleus.

Authors:  Eva M van Rikxoort; Ivana Isgum; Yulia Arzhaeva; Marius Staring; Stefan Klein; Max A Viergever; Josien P W Pluim; Bram van Ginneken
Journal:  Med Image Anal       Date:  2009-10-13       Impact factor: 8.545

5.  Robust statistical label fusion through COnsensus Level, Labeler Accuracy, and Truth Estimation (COLLATE).

Authors:  Andrew J Asman; Bennett A Landman
Journal:  IEEE Trans Med Imaging       Date:  2011-04-29       Impact factor: 10.048

6.  Nearly automatic segmentation of hippocampal subfields in in vivo focal T2-weighted MRI.

Authors:  Paul A Yushkevich; Hongzhi Wang; John Pluta; Sandhitsu R Das; Caryne Craige; Brian B Avants; Michael W Weiner; Susanne Mueller
Journal:  Neuroimage       Date:  2010-06-30       Impact factor: 6.556

7.  Fast and robust multi-atlas segmentation of brain magnetic resonance images.

Authors:  Jyrki Mp Lötjönen; Robin Wolz; Juha R Koikkalainen; Lennart Thurfjell; Gunhild Waldemar; Hilkka Soininen; Daniel Rueckert
Journal:  Neuroimage       Date:  2009-10-24       Impact factor: 6.556

8.  The optimal template effect in hippocampus studies of diseased populations.

Authors:  Brian B Avants; Paul Yushkevich; John Pluta; David Minkoff; Marc Korczykowski; John Detre; James C Gee
Journal:  Neuroimage       Date:  2009-10-08       Impact factor: 6.556

9.  Estimating a reference standard segmentation with spatially varying performance parameters: local MAP STAPLE.

Authors:  Olivier Commowick; Alireza Akhondi-Asl; Simon K Warfield
Journal:  IEEE Trans Med Imaging       Date:  2012-05-02       Impact factor: 10.048

10.  Regression-Based Label Fusion for Multi-Atlas Segmentation.

Authors:  Hongzhi Wang; Jung Wook Suh; Sandhitsu Das; John Pluta; Murat Altinay; Paul Yushkevich
Journal:  Conf Comput Vis Pattern Recognit Workshops       Date:  2011-06-20
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  3 in total

1.  A logarithmic opinion pool based STAPLE algorithm for the fusion of segmentations with associated reliability weights.

Authors:  Alireza Akhondi-Asl; Lennox Hoyte; Mark E Lockhart; Simon K Warfield
Journal:  IEEE Trans Med Imaging       Date:  2014-06-12       Impact factor: 10.048

2.  Quantitative light-induced fluorescence images and digital photographs - Reproducibility of manually marked demineralisations.

Authors:  Rosalia Tatano; Eva E Ehrlich; Benjamin Berkels; Ekaterina Sirazitdinova; Thomas M Deserno; Ulrike B Fritz
Journal:  J Orofac Orthop       Date:  2017-02-20       Impact factor: 1.938

3.  Manual-Protocol Inspired Technique for Improving Automated MR Image Segmentation during Label Fusion.

Authors:  Nikhil Bhagwat; Jon Pipitone; Julie L Winterburn; Ting Guo; Emma G Duerden; Aristotle N Voineskos; Martin Lepage; Steven P Miller; Jens C Pruessner; M Mallar Chakravarty
Journal:  Front Neurosci       Date:  2016-07-19       Impact factor: 4.677

  3 in total

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