Literature DB >> 24934452

The National Cancer Informatics Program (NCIP) Annotation and Image Markup (AIM) Foundation model.

Pattanasak Mongkolwat1, Vladimir Kleper, Skip Talbot, Daniel Rubin.   

Abstract

Knowledge contained within in vivo imaging annotated by human experts or computer programs is typically stored as unstructured text and separated from other associated information. The National Cancer Informatics Program (NCIP) Annotation and Image Markup (AIM) Foundation information model is an evolution of the National Institute of Health's (NIH) National Cancer Institute's (NCI) Cancer Bioinformatics Grid (caBIG®) AIM model. The model applies to various image types created by various techniques and disciplines. It has evolved in response to the feedback and changing demands from the imaging community at NCI. The foundation model serves as a base for other imaging disciplines that want to extend the type of information the model collects. The model captures physical entities and their characteristics, imaging observation entities and their characteristics, markups (two- and three-dimensional), AIM statements, calculations, image source, inferences, annotation role, task context or workflow, audit trail, AIM creator details, equipment used to create AIM instances, subject demographics, and adjudication observations. An AIM instance can be stored as a Digital Imaging and Communications in Medicine (DICOM) structured reporting (SR) object or Extensible Markup Language (XML) document for further processing and analysis. An AIM instance consists of one or more annotations and associated markups of a single finding along with other ancillary information in the AIM model. An annotation describes information about the meaning of pixel data in an image. A markup is a graphical drawing placed on the image that depicts a region of interest. This paper describes fundamental AIM concepts and how to use and extend AIM for various imaging disciplines.

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Year:  2014        PMID: 24934452      PMCID: PMC4391072          DOI: 10.1007/s10278-014-9710-3

Source DB:  PubMed          Journal:  J Digit Imaging        ISSN: 0897-1889            Impact factor:   4.056


  6 in total

1.  Supervised learning of semantic classes for image annotation and retrieval.

Authors:  Gustavo Carneiro; Antoni B Chan; Pedro J Moreno; Nuno Vasconcelos
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2007-03       Impact factor: 6.226

2.  Real-time computerized annotation of pictures.

Authors:  Jia Li; James Z Wang
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2008-06       Impact factor: 6.226

3.  The Annotation and Image Mark-up project.

Authors:  David S Channin; Pattanasak Mongkolwat; Vladimir Kleper; Daniel L Rubin
Journal:  Radiology       Date:  2009-12       Impact factor: 11.105

4.  Informatics in radiology: An open-source and open-access cancer biomedical informatics grid annotation and image markup template builder.

Authors:  Pattanasak Mongkolwat; David S Channin; Vladimir Kleper; Daniel L Rubin
Journal:  Radiographics       Date:  2012-05-03       Impact factor: 5.333

5.  The caBIG annotation and image Markup project.

Authors:  David S Channin; Pattanasak Mongkolwat; Vladimir Kleper; Kastubh Sepukar; Daniel L Rubin
Journal:  J Digit Imaging       Date:  2009-03-18       Impact factor: 4.056

6.  DICOM structured reporting and cancer clinical trials results.

Authors:  David A Clunie
Journal:  Cancer Inform       Date:  2007-05-12
  6 in total
  18 in total

1.  Semantic annotation of 3D anatomical models to support diagnosis and follow-up analysis of musculoskeletal pathologies.

Authors:  Imon Banerjee; Chiara Eva Catalano; Giuseppe Patané; Michela Spagnuolo
Journal:  Int J Comput Assist Radiol Surg       Date:  2015-11-28       Impact factor: 2.924

2.  Use of a Web-Based Calculator and a Structured Report Generator to Improve Efficiency, Accuracy, and Consistency of Radiology Reporting.

Authors:  Alexander J Towbin; C Matthew Hawkins
Journal:  J Digit Imaging       Date:  2017-10       Impact factor: 4.056

3.  Building and Querying RDF/OWL Database of Semantically Annotated Nuclear Medicine Images.

Authors:  Kyung Hoon Hwang; Haejun Lee; Geon Koh; Debra Willrett; Daniel L Rubin
Journal:  J Digit Imaging       Date:  2017-02       Impact factor: 4.056

Review 4.  Current Applications and Future Impact of Machine Learning in Radiology.

Authors:  Garry Choy; Omid Khalilzadeh; Mark Michalski; Synho Do; Anthony E Samir; Oleg S Pianykh; J Raymond Geis; Pari V Pandharipande; James A Brink; Keith J Dreyer
Journal:  Radiology       Date:  2018-06-26       Impact factor: 11.105

5.  Radiogenomics of clear cell renal cell carcinoma: preliminary findings of The Cancer Genome Atlas-Renal Cell Carcinoma (TCGA-RCC) Imaging Research Group.

Authors:  Atul B Shinagare; Raghu Vikram; Carl Jaffe; Oguz Akin; Justin Kirby; Erich Huang; John Freymann; Nisha I Sainani; Cheryl A Sadow; Tharakeswara K Bathala; Daniel L Rubin; Aytekin Oto; Matthew T Heller; Venkateswar R Surabhi; Venkat Katabathina; Stuart G Silverman
Journal:  Abdom Imaging       Date:  2015-08

Review 6.  An Assessment of Imaging Informatics for Precision Medicine in Cancer.

Authors:  C Chennubhotla; L P Clarke; A Fedorov; D Foran; G Harris; E Helton; R Nordstrom; F Prior; D Rubin; J H Saltz; E Shalley; A Sharma
Journal:  Yearb Med Inform       Date:  2017-09-11

7.  Radiology Reports With Hyperlinks Improve Target Lesion Selection and Measurement Concordance in Cancer Trials.

Authors:  Laura B Machado; Andrea B Apolo; Seth M Steinberg; Les R Folio
Journal:  AJR Am J Roentgenol       Date:  2017-02       Impact factor: 3.959

8.  Radiogenomics of High-Grade Serous Ovarian Cancer: Multireader Multi-Institutional Study from the Cancer Genome Atlas Ovarian Cancer Imaging Research Group.

Authors:  Hebert Alberto Vargas; Erich P Huang; Yulia Lakhman; Joseph E Ippolito; Priya Bhosale; Vincent Mellnick; Atul B Shinagare; Maria Anello; Justin Kirby; Brenda Fevrier-Sullivan; John Freymann; C Carl Jaffe; Evis Sala
Journal:  Radiology       Date:  2017-06-22       Impact factor: 11.105

9.  MR Imaging Radiomics Signatures for Predicting the Risk of Breast Cancer Recurrence as Given by Research Versions of MammaPrint, Oncotype DX, and PAM50 Gene Assays.

Authors:  Hui Li; Yitan Zhu; Elizabeth S Burnside; Karen Drukker; Katherine A Hoadley; Cheng Fan; Suzanne D Conzen; Gary J Whitman; Elizabeth J Sutton; Jose M Net; Marie Ganott; Erich Huang; Elizabeth A Morris; Charles M Perou; Yuan Ji; Maryellen L Giger
Journal:  Radiology       Date:  2016-05-05       Impact factor: 11.105

10.  Development and Reliability of a User-Friendly Multicenter Phenotyping Application for Hemorrhagic and Ischemic Stroke.

Authors:  Mayowa Owolabi; Godwin Ogbole; Rufus Akinyemi; Kehinde Salaam; Onoja Akpa; Pattanasak Mongkolwat; Adeleye Omisore; Atinuke Agunloye; Richard Efidi; Joseph Odo; Akintomiwa Makanjuola; Albert Akpalu; Fred Sarfo; Lukman Owolabi; Reginald Obiako; Kolawole Wahab; Emmanuel Sanya; Philip Adebayo; Morenikeji Komolafe; Abiodun Moshood Adeoye; Michael B Fawale; Joshua Akinyemi; Godwin Osaigbovo; Taofiki Sunmonu; Paul Olowoyo; Innocent Chukwuonye; Yahaya Obiabo; Philip Ibinaiye; Abdul Dambatta; Yaw Mensah; Salaam Abdul; Eunice Olabinri; Joyce Ikubor; Olalekan Oyinloye; Femi Odunlami; Ezinne Melikam; Raelle Saulson; Philip Kolo; Adesola Ogunniyi; Bruce Ovbiagele
Journal:  J Stroke Cerebrovasc Dis       Date:  2017-07-29       Impact factor: 2.136

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