Literature DB >> 25753955

Radiogenomics of clear cell renal cell carcinoma: preliminary findings of The Cancer Genome Atlas-Renal Cell Carcinoma (TCGA-RCC) Imaging Research Group.

Atul B Shinagare1, Raghu Vikram, Carl Jaffe, Oguz Akin, Justin Kirby, Erich Huang, John Freymann, Nisha I Sainani, Cheryl A Sadow, Tharakeswara K Bathala, Daniel L Rubin, Aytekin Oto, Matthew T Heller, Venkateswar R Surabhi, Venkat Katabathina, Stuart G Silverman.   

Abstract

PURPOSE: To investigate associations between imaging features and mutational status of clear cell renal cell carcinoma (ccRCC).
MATERIALS AND METHODS: This multi-institutional, multi-reader study included 103 patients (77 men; median age 59 years, range 34-79) with ccRCC examined with CT in 81 patients, MRI in 19, and both CT and MRI in three; images were downloaded from The Cancer Imaging Archive, an NCI-funded project for genome-mapping and analyses. Imaging features [size (mm), margin (well-defined or ill-defined), composition (solid or cystic), necrosis (for solid tumors: 0%, 1%-33%, 34%-66% or >66%), growth pattern (endophytic, <50% exophytic, or ≥50% exophytic), and calcification (present, absent, or indeterminate)] were reviewed independently by three readers blinded to mutational data. The association of imaging features with mutational status (VHL, BAP1, PBRM1, SETD2, KDM5C, and MUC4) was assessed.
RESULTS: Median tumor size was 49 mm (range 14-162 mm), 73 (71%) tumors had well-defined margins, 98 (95%) tumors were solid, 95 (92%) showed presence of necrosis, 46 (45%) had ≥50% exophytic component, and 18 (19.8%) had calcification. VHL (n = 52) and PBRM1 (n = 24) were the most common mutations. BAP1 mutation was associated with ill-defined margin and presence of calcification (p = 0.02 and 0.002, respectively, Pearson's χ (2) test); MUC4 mutation was associated with an exophytic growth pattern (p = 0.002, Mann-Whitney U test).
CONCLUSIONS: BAP1 mutation was associated with ill-defined tumor margins and presence of calcification; MUC4 mutation was associated with exophytic growth. Given the known prognostic implications of BAP1 and MUC4 mutations, these results support using radiogenomics to aid in prognostication and management.

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Year:  2015        PMID: 25753955      PMCID: PMC4534327          DOI: 10.1007/s00261-015-0386-z

Source DB:  PubMed          Journal:  Abdom Imaging        ISSN: 0942-8925


  25 in total

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Journal:  Cancer Res       Date:  2010-05-25       Impact factor: 12.701

Review 2.  Role of VHL gene mutation in human cancer.

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Authors:  Ramakrishna Venkatesh; Kyle Weld; Caroline D Ames; Sherbourne R Figenshau; Chandru P Sundaram; Gerald L Andriole; Ralph V Clayman; Jaime Landman
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Review 4.  Renal cell carcinoma 2005: new frontiers in staging, prognostication and targeted molecular therapy.

Authors:  John S Lam; Oleg Shvarts; John T Leppert; Robert A Figlin; Arie S Belldegrun
Journal:  J Urol       Date:  2005-06       Impact factor: 7.450

5.  Frequent somatic mutations and loss of heterozygosity of the von Hippel-Lindau tumor suppressor gene in primary human renal cell carcinomas.

Authors:  T Shuin; K Kondo; S Torigoe; T Kishida; Y Kubota; M Hosaka; Y Nagashima; H Kitamura; F Latif; B Zbar
Journal:  Cancer Res       Date:  1994-06-01       Impact factor: 12.701

6.  Sarcomatoid renal cell carcinoma: clinicopathologic. A study of 42 cases.

Authors:  J Y Ro; A G Ayala; A Sella; M L Samuels; D A Swanson
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Authors:  Alexander Kutikov; Robert G Uzzo
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8.  Exome sequencing identifies frequent mutation of the SWI/SNF complex gene PBRM1 in renal carcinoma.

Authors:  Ignacio Varela; Patrick Tarpey; Keiran Raine; Dachuan Huang; Choon Kiat Ong; Philip Stephens; Helen Davies; David Jones; Meng-Lay Lin; Jon Teague; Graham Bignell; Adam Butler; Juok Cho; Gillian L Dalgliesh; Danushka Galappaththige; Chris Greenman; Claire Hardy; Mingming Jia; Calli Latimer; King Wai Lau; John Marshall; Stuart McLaren; Andrew Menzies; Laura Mudie; Lucy Stebbings; David A Largaespada; L F A Wessels; Stephane Richard; Richard J Kahnoski; John Anema; David A Tuveson; Pedro A Perez-Mancera; Ville Mustonen; Andrej Fischer; David J Adams; Alistair Rust; Waraporn Chan-on; Chutima Subimerb; Karl Dykema; Kyle Furge; Peter J Campbell; Bin Tean Teh; Michael R Stratton; P Andrew Futreal
Journal:  Nature       Date:  2011-01-19       Impact factor: 49.962

9.  The impact of genetic heterogeneity on biomarker development in kidney cancer assessed by multiregional sampling.

Authors:  Alexander Sankin; Abraham A Hakimi; Nina Mikkilineni; Irina Ostrovnaya; Mikhail T Silk; Yupu Liang; Roy Mano; Michael Chevinsky; Robert J Motzer; Stephen B Solomon; Emily H Cheng; Jeremy C Durack; Jonathan A Coleman; Paul Russo; James J Hsieh
Journal:  Cancer Med       Date:  2014-08-14       Impact factor: 4.452

10.  Systematic sequencing of renal carcinoma reveals inactivation of histone modifying genes.

Authors:  Gillian L Dalgliesh; Kyle Furge; Chris Greenman; Lina Chen; Graham Bignell; Adam Butler; Helen Davies; Sarah Edkins; Claire Hardy; Calli Latimer; Jon Teague; Jenny Andrews; Syd Barthorpe; Dave Beare; Gemma Buck; Peter J Campbell; Simon Forbes; Mingming Jia; David Jones; Henry Knott; Chai Yin Kok; King Wai Lau; Catherine Leroy; Meng-Lay Lin; David J McBride; Mark Maddison; Simon Maguire; Kirsten McLay; Andrew Menzies; Tatiana Mironenko; Lee Mulderrig; Laura Mudie; Sarah O'Meara; Erin Pleasance; Arjunan Rajasingham; Rebecca Shepherd; Raffaella Smith; Lucy Stebbings; Philip Stephens; Gurpreet Tang; Patrick S Tarpey; Kelly Turrell; Karl J Dykema; Sok Kean Khoo; David Petillo; Bill Wondergem; John Anema; Richard J Kahnoski; Bin Tean Teh; Michael R Stratton; P Andrew Futreal
Journal:  Nature       Date:  2010-01-06       Impact factor: 49.962

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  31 in total

1.  Renal cell carcinoma: the search for a reliable biomarker.

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2.  Integrative radiomics expression predicts molecular subtypes of primary clear cell renal cell carcinoma.

Authors:  Q Yin; S-C Hung; W K Rathmell; L Shen; L Wang; W Lin; J R Fielding; A H Khandani; M E Woods; M I Milowsky; S A Brooks; E M Wallen; D Shen
Journal:  Clin Radiol       Date:  2018-05-23       Impact factor: 2.350

3.  Society of Abdominal Radiology disease-focused panel on renal cell carcinoma: update on past, current, and future goals.

Authors:  Matthew S Davenport; Hersh Chandarana; Nicole E Curci; Ankur Doshi; Samuel D Kaffenberger; Ivan Pedrosa; Erick M Remer; Nicola Schieda; Atul B Shinagare; Andrew D Smith; Zhen J Wang; Shane A Wells; Stuart G Silverman
Journal:  Abdom Radiol (NY)       Date:  2018-09

4.  Prostate cancer radiomics and the promise of radiogenomics.

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Review 5.  Radiomics in Kidney Cancer: MR Imaging.

Authors:  Alberto Diaz de Leon; Payal Kapur; Ivan Pedrosa
Journal:  Magn Reson Imaging Clin N Am       Date:  2019-02       Impact factor: 2.266

Review 6.  Imaging genomics in cancer research: limitations and promises.

Authors:  Harrison X Bai; Ashley M Lee; Li Yang; Paul Zhang; Christos Davatzikos; John M Maris; Sharon J Diskin
Journal:  Br J Radiol       Date:  2016-02-11       Impact factor: 3.039

7.  White Paper on P4 Concepts for Pediatric Imaging.

Authors:  Heike E Daldrup-Link; Christina Sammet; Marta Hernanz-Schulman; Katherine A Barsness; Anne Marie Cahill; Ellen Chung; Andrea S Doria; Kassa Darge; Rajesh Krishnamurthy; Matthew P Lungren; Sheila Moore; Laura Olivieri; Ashok Panigrahy; Alexander J Towbin; Andrew Trout; Stephan Voss
Journal:  J Am Coll Radiol       Date:  2016-02-02       Impact factor: 5.532

8.  Differentiation of clear cell and non-clear cell renal cell carcinomas by all-relevant radiomics features from multiphase CT: a VHL mutation perspective.

Authors:  Zhi-Cheng Li; Guangtao Zhai; Jinheng Zhang; Zhongqiu Wang; Guiqin Liu; Guang-Yu Wu; Dong Liang; Hairong Zheng
Journal:  Eur Radiol       Date:  2018-12-06       Impact factor: 5.315

9.  Reliable gene mutation prediction in clear cell renal cell carcinoma through multi-classifier multi-objective radiogenomics model.

Authors:  Xi Chen; Zhiguo Zhou; Raquibul Hannan; Kimberly Thomas; Ivan Pedrosa; Payal Kapur; James Brugarolas; Xuanqin Mou; Jing Wang
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Review 10.  Background, applications and challenges of radiogenomics in genitourinary tumor.

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Journal:  Am J Cancer Res       Date:  2021-05-15       Impact factor: 6.166

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