Literature DB >> 24608060

Blind end-member and abundance extraction for multispectral fluorescence lifetime imaging microscopy data.

Omar Gutierrez-Navarro, Daniel U Campos-Delgado, Edgar R Arce-Santana, Martin O Mendez, Javier A Jo.   

Abstract

This paper proposes a new blind end-member and abundance extraction (BEAE) method for multispectral fluorescence lifetime imaging microscopy (m-FLIM) data. The chemometrical analysis relies on an iterative estimation of the fluorescence decay end-members and their abundances. The proposed method is based on a linear mixture model with positivity and sum-to-one restrictions on the abundances and end-members to compensate for signature variability. The synthesis procedure depends on a quadratic optimization problem, which is solved by an alternating least-squares structure over convex sets. The BEAE strategy only assumes that the number of components in the analyzed sample is known a spriori. The proposed method is first validated by using synthetic m-FLIM datasets at 15, 20, and 25 dB signal-to-noise ratios. The samples simulate the mixed response of tissue containing multiple fluorescent intensity decays. Furthermore, the results were also validated with six m-FLIM datasets from fresh postmortem human coronary atherosclerotic plaques. A quantitative evaluation of the BEAE was made against two popular techniques: minimum volume constrained nonnegative matrix factorization (MVC-NMF) and multivariate curve resolution-alternating least-squares (MCR-ALS). Our proposed method (BEAE) was able to provide more accurate estimations of the end-members: 0.32% minimum relative error and 13.82% worst-case scenario, despite different initial conditions in the iterative optimization procedure and noise effect. Meanwhile, MVC-NMF and MCR-ALS presented more variability in estimating the end-members: 0.35% and 0.34% for minimum errors and 15.31% and 13.25% in the worst-case scenarios, respectively. This tendency was also maintained for the abundances, where BEAE obtained 0.05 as the minimum absolute error and 0.12 in the worst-case scenario; MCR-ALS and MVC-NMF achieved 0.04 and 0.06 for the minimum absolute errors, and 0.15 and 0.17 under the worst-case conditions, respectively. In addition, the average computation time was evaluated for the synthetic datasets, where MVC-NMF achieved the fastest time, followed by BEAE and finally MCR-ALS. Consequently, BEAE improved MVC-NMF in convergence to a local optimal solution and robustness against signal variability, and it is roughly 3.6 time faster than MCR-ALS.

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Year:  2014        PMID: 24608060     DOI: 10.1109/JBHI.2013.2279335

Source DB:  PubMed          Journal:  IEEE J Biomed Health Inform        ISSN: 2168-2194            Impact factor:   5.772


  9 in total

1.  Deconvolution of fluorescence lifetime imaging microscopy by a library of exponentials.

Authors:  Daniel U Campos-Delgado; O Gutierrez Navarro; E R Arce-Santana; Alex J Walsh; Melissa C Skala; Javier A Jo
Journal:  Opt Express       Date:  2015-09-07       Impact factor: 3.894

2.  Blind deconvolution estimation of fluorescence measurements through quadratic programming.

Authors:  Daniel U Campos-Delgado; Omar Gutierrez-Navarro; Edgar R Arce-Santana; Melissa C Skala; Alex J Walsh; Javier A Jo
Journal:  J Biomed Opt       Date:  2015-07       Impact factor: 3.170

3.  Extended output phasor representation of multi-spectral fluorescence lifetime imaging microscopy.

Authors:  Daniel U Campos-Delgado; O Gutiérrez Navarro; E R Arce-Santana; Javier A Jo
Journal:  Biomed Opt Express       Date:  2015-05-13       Impact factor: 3.732

4.  Automatic classification of atherosclerotic plaques imaged with intravascular OCT.

Authors:  Jose J Rico-Jimenez; Daniel U Campos-Delgado; Martin Villiger; Kenichiro Otsuka; Brett E Bouma; Javier A Jo
Journal:  Biomed Opt Express       Date:  2016-09-15       Impact factor: 3.732

5.  Estimation of the number of fluorescent end-members for quantitative analysis of multispectral FLIM data.

Authors:  Omar Gutierrez-Navarro; Daniel U Campos-Delgado; Edgar R Arce-Santana; Kristen C Maitland; Shuna Cheng; Joey Jabbour; Bilal Malik; Rodrigo Cuenca; Javier A Jo
Journal:  Opt Express       Date:  2014-05-19       Impact factor: 3.894

6.  AI-Assisted In Situ Detection of Human Glioma Infiltration Using a Novel Computational Method for Optical Coherence Tomography.

Authors:  Ronald M Juarez-Chambi; Carmen Kut; Jose J Rico-Jimenez; Kaisorn L Chaichana; Jiefeng Xi; Daniel U Campos-Delgado; Fausto J Rodriguez; Alfredo Quinones-Hinojosa; Xingde Li; Javier A Jo
Journal:  Clin Cancer Res       Date:  2019-07-17       Impact factor: 12.531

7.  Extended Blind End-member and Abundance Extraction for Biomedical Imaging Applications.

Authors:  D U Campos-Delgado; O Gutierrez-Navarro; J J Rico-Jimenez; E Duran; H Fabelo; S Ortega; G M Callicó; J A Jo
Journal:  IEEE Access       Date:  2019-12-12       Impact factor: 3.367

8.  Quadratic blind linear unmixing: A graphical user interface for tissue characterization.

Authors:  O Gutierrez-Navarro; D U Campos-Delgado; E R Arce-Santana; Javier A Jo
Journal:  Comput Methods Programs Biomed       Date:  2015-11-10       Impact factor: 5.428

9.  Two-hierarchical nonnegative matrix factorization distinguishing the fluorescent targets from autofluorescence for fluorescence imaging.

Authors:  Shaosen Huang; Yong Zhao; Binjie Qin
Journal:  Biomed Eng Online       Date:  2015-12-15       Impact factor: 2.819

  9 in total

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