Literature DB >> 28338682

Simple peptides derived from the ribosomal core potentiate RNA polymerase ribozyme function.

Shunsuke Tagami1, James Attwater1, Philipp Holliger1.   

Abstract

The emergence of functional interactions between nucleic acids and polypeptides was a key transition in the origin of life and remains at the heart of all biology. However, how and why simple non-coded peptides could have become critical for RNA function is unclear. Here, we show that putative ancient peptide segments from the cores of both ribosomal subunits enhance RNA polymerase ribozyme (RPR) function, as do derived homopolymeric peptides comprising lysine or the non-proteinogenic lysine analogues ornithine or, to a lesser extent, diaminobutyric acid, irrespective of chirality or chiral purity. Lysine decapeptides enhance RPR function by promoting holoenzyme assembly through primer-template docking, accelerate RPR evolution, and allow RPR-catalysed RNA synthesis at near physiological (≥1 mM) Mg2+ concentrations, enabling templated RNA synthesis within membranous protocells. Our results outline how compositionally simple, mixed-chirality peptides may have augmented the functional potential of early RNAs and promoted the emergence of the first protocells.

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Year:  2017        PMID: 28338682      PMCID: PMC5458135          DOI: 10.1038/nchem.2739

Source DB:  PubMed          Journal:  Nat Chem        ISSN: 1755-4330            Impact factor:   24.427


  40 in total

Review 1.  The origin of the genetic code: amino acids as cofactors in an RNA world.

Authors:  E Szathmáry
Journal:  Trends Genet       Date:  1999-06       Impact factor: 11.639

2.  The structural basis of ribosome activity in peptide bond synthesis.

Authors:  P Nissen; J Hansen; N Ban; P B Moore; T A Steitz
Journal:  Science       Date:  2000-08-11       Impact factor: 47.728

3.  Systems of creation: the emergence of life from nonliving matter.

Authors:  Stephen Mann
Journal:  Acc Chem Res       Date:  2012-03-09       Impact factor: 22.384

4.  Ribozyme-catalyzed transcription of an active ribozyme.

Authors:  Aniela Wochner; James Attwater; Alan Coulson; Philipp Holliger
Journal:  Science       Date:  2011-04-08       Impact factor: 47.728

5.  The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme.

Authors:  C Guerrier-Takada; K Gardiner; T Marsh; N Pace; S Altman
Journal:  Cell       Date:  1983-12       Impact factor: 41.582

6.  T7 RNA polymerase studied by force measurements varying cofactor concentration.

Authors:  P Thomen; P J Lopez; U Bockelmann; J Guillerez; M Dreyfus; F Heslot
Journal:  Biophys J       Date:  2008-09       Impact factor: 4.033

7.  Synthetic genetic polymers capable of heredity and evolution.

Authors:  Vitor B Pinheiro; Alexander I Taylor; Christopher Cozens; Mikhail Abramov; Marleen Renders; Su Zhang; John C Chaput; Jesper Wengel; Sew-Yeu Peak-Chew; Stephen H McLaughlin; Piet Herdewijn; Philipp Holliger
Journal:  Science       Date:  2012-04-20       Impact factor: 47.728

8.  The mechanism for activation of GTP hydrolysis on the ribosome.

Authors:  Rebecca M Voorhees; T Martin Schmeing; Ann C Kelley; V Ramakrishnan
Journal:  Science       Date:  2010-11-05       Impact factor: 47.728

9.  A synthetic approach to abiogenesis.

Authors:  James Attwater; Philipp Holliger
Journal:  Nat Methods       Date:  2014-05       Impact factor: 28.547

10.  Oligoarginine peptides slow strand annealing and assist non-enzymatic RNA replication.

Authors:  Tony Z Jia; Albert C Fahrenbach; Neha P Kamat; Katarzyna P Adamala; Jack W Szostak
Journal:  Nat Chem       Date:  2016-06-27       Impact factor: 24.427

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  16 in total

1.  The Origin(s) of Cell(s): Pre-Darwinian Evolution from FUCAs to LUCA : To Carl Woese (1928-2012), for his Conceptual Breakthrough of Cellular Evolution.

Authors:  Shiping Tang
Journal:  J Mol Evol       Date:  2021-06-25       Impact factor: 2.395

2.  Surveying the sequence diversity of model prebiotic peptides by mass spectrometry.

Authors:  Jay G Forsythe; Anton S Petrov; W Calvin Millar; Sheng-Sheng Yu; Ramanarayanan Krishnamurthy; Martha A Grover; Nicholas V Hud; Facundo M Fernández
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-28       Impact factor: 11.205

3.  Primordial emergence of a nucleic acid-binding protein via phase separation and statistical ornithine-to-arginine conversion.

Authors:  Liam M Longo; Dragana Despotović; Orit Weil-Ktorza; Matthew J Walker; Jagoda Jabłońska; Yael Fridmann-Sirkis; Gabriele Varani; Norman Metanis; Dan S Tawfik
Journal:  Proc Natl Acad Sci U S A       Date:  2020-06-19       Impact factor: 11.205

4.  Enhanced Ribozyme-Catalyzed Recombination and Oligonucleotide Assembly in Peptide-RNA Condensates.

Authors:  Kristian Le Vay; Emilie Yeonwha Song; Basusree Ghosh; T-Y Dora Tang; Hannes Mutschler
Journal:  Angew Chem Int Ed Engl       Date:  2021-11-09       Impact factor: 16.823

5.  Mutually stabilizing interactions between proto-peptides and RNA.

Authors:  Moran Frenkel-Pinter; Jay W Haynes; Ahmad M Mohyeldin; Martin C; Alyssa B Sargon; Anton S Petrov; Ramanarayanan Krishnamurthy; Nicholas V Hud; Loren Dean Williams; Luke J Leman
Journal:  Nat Commun       Date:  2020-06-19       Impact factor: 14.919

Review 6.  Progress in synthesizing protocells.

Authors:  O Duhan Toparlak; Sheref S Mansy
Journal:  Exp Biol Med (Maywood)       Date:  2018-12-03

7.  Origin and Evolution of RNA-Dependent RNA Polymerase.

Authors:  Savio T de Farias; Ariosvaldo P Dos Santos Junior; Thais G Rêgo; Marco V José
Journal:  Front Genet       Date:  2017-09-20       Impact factor: 4.599

8.  Ribozyme-catalysed RNA synthesis using triplet building blocks.

Authors:  James Attwater; Aditya Raguram; Alexey S Morgunov; Edoardo Gianni; Philipp Holliger
Journal:  Elife       Date:  2018-05-15       Impact factor: 8.140

9.  Template-directed RNA polymerization and enhanced ribozyme catalysis inside membraneless compartments formed by coacervates.

Authors:  Raghav R Poudyal; Rebecca M Guth-Metzler; Andrew J Veenis; Erica A Frankel; Christine D Keating; Philip C Bevilacqua
Journal:  Nat Commun       Date:  2019-01-30       Impact factor: 14.919

10.  Non-Enzymatic Assembly of a Minimized RNA Polymerase Ribozyme.

Authors:  Falk Wachowius; Philipp Holliger
Journal:  ChemSystemsChem       Date:  2019-02-20
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